Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01365 ATGGACAATTATGGGTCTTCACCTCCATATGGGTATCCAAACCCATATGGGTACCCTAGCAACAACCCTCCATACCCACCTTCAGCTCAATATGCACCTGATCCATATGCACATGCACCTGGACATGCACCTGATCCATATGCACATTCACCTGCACATGCACCTTATCCATATCCATCACATTCCTTCAACTACACCTACCCTCCACCTCCTTCATCAACCTCTTCAACTAACCCTTCAGACTATCCTACTCCTCAGCCATATCATGCTTATCCATACCCTTACCAAGCCCCTCCAGGGTGGAGTGGTGGAGTATCTCAAACCAATGATGACTCAAACCATTCTCATAGTTCTTCTGTTTACCCTCCTTTGGATGATCTTATGAGCAATGTTAGGTTGTCTGATAACCAGCCAACTGCACCTCCTCTATTGAGACATTCCATTTCAGTTCCAAAACAAGATAGGGAAGAGGAGTTTCATGATTATTCTAGACACTCCTTCTCAGGTTGGGAACCTTCAGTGGATTCTTCCAAACTTTCAGCTTATTCTGGCTCATTTGATGACTCATCAGTGCACAGTCAGAGTTTGCAGATTGTTCCAGTTCAACACAAAGGGTCTCTGAGAGTTTTGCTCTTACATGGGAATTTTGATATATGGGTTCATGGAGCCAATAATCTTCCCAATATGGACATGTTCCACAAAACTTTGGGGGATATGTTTAGTAAATTGCCTGTTAATGTGAGCAACAAGATTGAGGGAACAGTGACCAGGAAGATTACCAGTGATCCTTATGTGACAATATCTGTATCAAATGCTGTAGTTGGGAGGACTTTTGTGATTAGCAACAGTGAAAACCCTGTATGGGAGCAACACTTTTATGTTCCTGTTGCACATCATGCTGCTGAAGTGCATTTCGTTGTTAAGGACAGTGATGTGGTGGGTTCACAGCAAATTGGCATTGTGACAATTCCTGTGGAACAAATATACTCAGGGGAAAGAGTACAAGGGACATACCCTATTCTGAATAACAATGGGAAGCCTTGTAAGCAAGGTGCTGTGTTGAGTCTATCCATTCAGTTCATTCCAATGGAGAAACTGAGCTTTTATCATCAAGGAGTTGGAGCAGGACCAGAATACATTGGGGTTCCTGGCACATATTTTCCATTGAGGAAAGGTGGAACTGTGACTCTATATCAAGATGCTGATGTTCCAGATGGCTGCCTCCCAAATGTGATGCTTGAGCATGGAATGTATTATGCACATGGAAAGTGTTGGCATGATATCTTTGATGCCATACGTCAAGCTCAGCGTTTGGTTTACATTACAGGATGGTCAGTGTGGCACAAAGTTAGGTTGGTAAGGGATGCTGCTGGTCATGCATCAGATTTCATCCTTGGTGATCTTCTGAGGGCCAAGTCTCAGGAAGGAGTAAGGGTGCTTCTCCTTGTTTGGGATGACCCTACATCAAGGAACATTCTTGGTTATAATACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGACGATTTTTCAAGCACTCTTCTGTGCAAGTGCTGCTTTGTCCTCGCATGGGCGGAAAACGACATAGCTGGGCCAAGCAAAGGGAAGTTGAAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAAATTATAGCGTTTGTTGGTGGACTTGATTTGTGTGACGGACGATATGATACTCCCCACCATCCCCTCTTCAAGACACTGCAGACACTGCATAAGGATGATTATCACAACCCTACATTCACGGGTAACACTGGTGGCTGTCCACGGGAGCCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTACGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAAAGCTGCAAAACCTAAAGGGATAAAAAAGTTGAAGAGTTCGTATGATGATGCACTGCTCAGGATAGAAAGAGTACGAGATATTATCGGTCAACATGATGCTCCTAATGTTAGTGATGATAATCCTGAAGCTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAGTTCTGTTAAGGGATTTCCAGAGGAACCAAAAGATGCATCTAGCATGAACCTTGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATTCGTGCGGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGTTCCTCATACAATTGGAGTCAACATAAAGACCTTGGTGCTAATAATTTAATTCCAATGGAAATTGCACTGAAGATTGCTGAAAAGATAAAAGCAAATGAGAGATTTGCAGTATACATTGTTATTCCAATGTGGCCAGAGGGTGTTCCAACAGGGGCTGCCACCCAGAGGATTCTATTTTGGCAGCATAAAACAATGCAAATGATGTACGAGACAATTTACAAGGCTTTGGTTGAAGCTGGGCTTGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTCGGCAATCGCGAGGCCATAGATATGTATGAGAATGTTGCTGTGTCTGGAAATCCTCCCCCAGCAAATAGTCCACAAGCGATAAGTCGAAATAGTCGACGTTTCATGATTTATGTTCATTCAAAAGGAATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTCATCATACCTGGGCAAGAAAACAGTCTTATCCACATGGCCAGATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGTACAATTGAAGACTGCTTCTTACAACCAGAGAGCCTAGAATGTGTGAGAAGGATTAGAACAATGGGTGAACTGAACTGGAAACAATTTTCATCAAATGATGTAACAGAGATGAGAGGGCATCTACTCAAGTACCCTGTAGAAGTTGACAGAAAGGGTAAGGTTAGACCCCTTCCTGGCCATGAAGAGTTCCCTGATGTGGGAGGAAAGATAGTAGGATCATTTATTGCCATTCAAGAGAATCTAACCATTTGA 3090 0.4265 MDNYGSSPPYGYPNPYGYPSNNPPYPPSAQYAPDPYAHAPGHAPDPYAHSPAHAPYPYPSHSFNYTYPPPPSSTSSTNPSDYPTPQPYHAYPYPYQAPPGWSGGVSQTNDDSNHSHSSSVYPPLDDLMSNVRLSDNQPTAPPLLRHSISVPKQDREEEFHDYSRHSFSGWEPSVDSSKLSAYSGSFDDSSVHSQSLQIVPVQHKGSLRVLLLHGNFDIWVHGANNLPNMDMFHKTLGDMFSKLPVNVSNKIEGTVTRKITSDPYVTISVSNAVVGRTFVISNSENPVWEQHFYVPVAHHAAEVHFVVKDSDVVGSQQIGIVTIPVEQIYSGERVQGTYPILNNNGKPCKQGAVLSLSIQFIPMEKLSFYHQGVGAGPEYIGVPGTYFPLRKGGTVTLYQDADVPDGCLPNVMLEHGMYYAHGKCWHDIFDAIRQAQRLVYITGWSVWHKVRLVRDAAGHASDFILGDLLRAKSQEGVRVLLLVWDDPTSRNILGYNTDGVMATHDEETRRFFKHSSVQVLLCPRMGGKRHSWAKQREVETIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPHHPLFKTLQTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKAAKPKGIKKLKSSYDDALLRIERVRDIIGQHDAPNVSDDNPEAWHVQIFRSIDSSSVKGFPEEPKDASSMNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREAIDMYENVAVSGNPPPANSPQAISRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHHTWARKQSYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVRRIRTMGELNWKQFSSNDVTEMRGHLLKYPVEVDRKGKVRPLPGHEEFPDVGGKIVGSFIAIQENLTI* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01365 1029 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 875 902 IPR001736 GO:0003824
Rops4g01365 1029 MobiDBLite consensus disorder prediction 62 76 - -
Rops4g01365 1029 Pfam C2 domain 214 340 IPR000008 -
Rops4g01365 1029 MobiDBLite consensus disorder prediction 149 165 - -
Rops4g01365 1029 Gene3D Endonuclease Chain A 684 930 - -
Rops4g01365 1029 SMART C2_3c 215 337 IPR000008 -
Rops4g01365 1029 Gene3D Endonuclease Chain A 414 657 - -
Rops4g01365 1029 Gene3D C2 domain 209 353 IPR035892 -
Rops4g01365 1029 Pfam Phospholipase D C terminal 949 1019 IPR024632 -
Rops4g01365 1029 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 212 362 IPR035892 -
Rops4g01365 1029 MobiDBLite consensus disorder prediction 12 33 - -
Rops4g01365 1029 SUPERFAMILY Phospholipase D/nuclease 418 639 - -
Rops4g01365 1029 SUPERFAMILY Phospholipase D/nuclease 709 961 - -
Rops4g01365 1029 CDD C2_plant_PLD 209 361 - -
Rops4g01365 1029 ProSiteProfiles C2 domain profile. 203 338 IPR000008 -
Rops4g01365 1029 SMART pld_4 540 575 IPR001736 GO:0003824
Rops4g01365 1029 SMART pld_4 875 902 IPR001736 GO:0003824
Rops4g01365 1029 SUPERFAMILY beta-sandwich domain of Sec23/24 12 978 - -
Rops4g01365 1029 FunFam Phospholipase D 688 921 - -
Rops4g01365 1029 Pfam Phospholipase D Active site motif 876 902 IPR001736 GO:0003824
Rops4g01365 1029 Pfam Phospholipase D Active site motif 541 575 IPR001736 GO:0003824
Rops4g01365 1029 FunFam Phospholipase D delta 415 654 - -
Rops4g01365 1029 MobiDBLite consensus disorder prediction 101 143 - -
Rops4g01365 1029 PANTHER PHOSPHOLIPASE D 206 1019 IPR015679 -
Rops4g01365 1029 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 540 575 IPR001736 GO:0003824
Rops4g01365 1029 MobiDBLite consensus disorder prediction 1 173 - -
Rops4g01365 1029 FunFam Phospholipase D delta 209 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01365 Rops-Chr4 35567377 35576579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01365 43 1029 Phospholipase D Gene Family (Wang group) AT2G42010 69.801 0.0 1464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01365 K01115 - gmx:100791059 1620.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01365 4 35567377 35576579 Rops4g01365 4 35567377 35576579 ECH