Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01339 ATGGACTATTTTGTACTTCTTTTGCTGATTTCCTTATTGTGGATAAGCATTCATGTCCTCATCTCAAGCTTAGGAATCAAAACACCAAAATCCTTCAAATACCCACCAGGACCTCGCCCTTTTCCTATAATAGGAAACATATTAGAACTTGGTAGCCAGCCTCACCAGACACTTACCAACCTTTCCCAAATTCATGGACCTGTAATGAGACTGAAGCTTGGTAGCACAACCACCATAGTCATTTCCTCTCCACAAGCTGCCAAAGAAGTCCTCCATAAAAATGATCATATCTCCTGTAATAGGGCAGTCCCAGATGCTATGCGAGCCCTTGACCACCACAAATTTTCATTGGGATGGATGCCTCCTTCAGATGAATGGAGGATATTGAAGAGATTTTGTACCACCAAAGTATTCCCTTCTAACAAGCTTGACTCTACACAACTTCTTCGTCAAAGGAAGGTCCAAGAATTGTTGGATTATGTCAAGGAAAGATGCAAGAAAGGTGAAGCTTTGGATATTGGTGAGGCTTCCTTTACAACTGTGCTTAATTCCATATCAAACACATTATTCTCTATGGATTTGGCTCATTACACTTCTGATAAGTCTCAAGAATTCAGACACATCATTTCGGGTGTCGCGGAAGAAGTTGGAAAGCCAAATGTTGCGGACTTATTCCCAATCTTTCGCTTGTTTGATCCACAAAGTGCACGTTCAAGAATGAGCAGTTACTATGGAAAGTTAATTGCACTTTTTGATGGGATCATAGATGAAAGACTGAGCTTAAGAGCTTTAGGAAATGAATACAAGCCGTACAATGACGTGCTGGATGCTGCCTTGGAATTCCTGCTAGAAGACAATTCACAAGTGAACCGCACTCATGTATTGCACTTATTTCTGGATTTATTTGTGGCCGGAATAGAATCTACATCGATCACAATAGAATGGGCGATGGCTGAGTTGCTACACAACCCAAAAATCCTAGAAAAAGTTAGAGAAGAGCTTCAATTGGTCCTTGCCGAAGGTGAACAACTTATAGAACCACACATCTCAAAGCTTCCTTTCCTACAAGCAGTGATAAAGGAAACTTTCCGTTTGCATCCAGCCACCCCTTTTTTATTACCACACAAGTCAGATGTTGATGTTGAACTTTGTGGTTTAATGGTGCCTAAAAATGCACAAATTCTAGTCAATGTGTGGGCTATTGGGAGAGATTCAAGGATTTGGAAAAATCCAAATCAATTTATGCCTGAAAGATTCTTAGACAGTGGGATTGATTTTAAAGGTCAAAATTTTGAACTGATTCCCTTTGGAGCTGGAAGAAGGATCTGCCCTGGAATACCATTGGCTTATAGGACTATGCACATTGTGTTGGCCTCTCTTCTATATGACTATGATTGGAAGCTGGCGAATGGGCTAATGCCAGAAAACATGGATATGTCTGACAAATACGGGTTTACCTTGCATAAGGCACAACCTCTCAAAGTCATTCCCATCCAAGCATAA 1503 0.4079 MDYFVLLLLISLLWISIHVLISSLGIKTPKSFKYPPGPRPFPIIGNILELGSQPHQTLTNLSQIHGPVMRLKLGSTTTIVISSPQAAKEVLHKNDHISCNRAVPDAMRALDHHKFSLGWMPPSDEWRILKRFCTTKVFPSNKLDSTQLLRQRKVQELLDYVKERCKKGEALDIGEASFTTVLNSISNTLFSMDLAHYTSDKSQEFRHIISGVAEEVGKPNVADLFPIFRLFDPQSARSRMSSYYGKLIALFDGIIDERLSLRALGNEYKPYNDVLDAALEFLLEDNSQVNRTHVLHLFLDLFVAGIESTSITIEWAMAELLHNPKILEKVREELQLVLAEGEQLIEPHISKLPFLQAVIKETFRLHPATPFLLPHKSDVDVELCGLMVPKNAQILVNVWAIGRDSRIWKNPNQFMPERFLDSGIDFKGQNFELIPFGAGRRICPGIPLAYRTMHIVLASLLYDYDWKLANGLMPENMDMSDKYGFTLHKAQPLKVIPIQA* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01339 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Rops4g01339 500 SUPERFAMILY Cytochrome P450 35 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 Gene3D Cytochrome P450 21 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 9 499 - -
Rops4g01339 500 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 Pfam Cytochrome P450 35 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01339 500 FunFam Cytochrome P450 76C4 27 496 - -
Rops4g01339 500 CDD CYP76-like 62 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01339 Rops-Chr4 35015949 35018618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01339 8 499 Cytochrome P450 AT2G45550 45.582 2.95e-166 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01339 - - gmx:100779789 739.184