Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01338 ATGAGACTGAAGCTTGGTAACACAACCACCATAGTCATTTCCTCTCCACAAGCTGCCAAAGAAGTACTCCATAAAAATGACCACATCTTCTCTAACAGGAAAGTCCCAGATACTGTCCGAGCACTTGACCACCACAAACTTTCAGTTGGATGGATGCCAACCTCAGATCAATGTACACAAGTTCTTCGTCAAAGGAAGGTGCAAGAGTTGCTGGATTATGTAAAGGAAAGCTGCAAGAAAGGACAAGCTTTGGATATTGGTGAGGCTTCCTTTACAACCATGCTTAATTCCATATCAAACACTTTATTCTCTATGGATTTGGCTCATTACACTTCTGATAAGTCTCAAGAGTTCAAGGACATCATTTGGGGTATCATGGAAGAAGTTGGAAAGCCCAATGTTGTGGACTTCTTCCCAATCTTTCGCCTGCTTGATCCACAAGGTGCGCGTGCAAGAACCAAAAGTTATTTTGGAAAGTTAATTTCATTTTTTGATGGTCTTATAGAAGAAAGATTGCGCCTAAGAGCTTTAGGAAATGAATCCAAGGCATGCAACGATGTGTTAGATTCTGCGCTGGAACTAATGCTGGATGACAATTCACAACTGAGCCGCCCTCATGTATTGCATTTATTCCTGGATTTGTTCGTGGCTGGGATAGACAAAACATCAAGCTCAATAGAATGGGCAATGGCTGAGTTGTTGGGTAACCCAAAAACACTAGAAAAAGTTAAAAAGGAACTTCAAAATGTCATTGCAAAAAGTGAACCACTAGAAGTATCACATATCTCGAAGCTTCCTTTCCTACAAGCAGTGATGAAGGAAACTCTGCGCTTGCATCCACCTGGCCCATTGTTAGTGCCACACAAGACAGATATTGATGTCGAACTCTGTGGTTTCAATGGTGCCTAA 909 0.4169 MRLKLGNTTTIVISSPQAAKEVLHKNDHIFSNRKVPDTVRALDHHKLSVGWMPTSDQCTQVLRQRKVQELLDYVKESCKKGQALDIGEASFTTMLNSISNTLFSMDLAHYTSDKSQEFKDIIWGIMEEVGKPNVVDFFPIFRLLDPQGARARTKSYFGKLISFFDGLIEERLRLRALGNESKACNDVLDSALELMLDDNSQLSRPHVLHLFLDLFVAGIDKTSSSIEWAMAELLGNPKTLEKVKKELQNVIAKSEPLEVSHISKLPFLQAVMKETLRLHPPGPLLVPHKTDIDVELCGFNGA* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01338 302 SUPERFAMILY Cytochrome P450 1 299 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01338 302 PRINTS P450 superfamily signature 217 234 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01338 302 PRINTS P450 superfamily signature 270 281 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01338 302 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 57 - -
Rops4g01338 302 Pfam Cytochrome P450 1 299 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01338 302 PRINTS E-class P450 group I signature 206 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01338 302 PRINTS E-class P450 group I signature 226 252 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01338 302 PRINTS E-class P450 group I signature 18 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01338 302 PRINTS E-class P450 group I signature 269 287 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01338 302 Gene3D Cytochrome P450 1 300 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01338 Rops-Chr4 34956657 34961575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01338 1 299 Cytochrome P450 AT2G45550 43.925 1.52e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01338 - - gmx:100809483 465.307