Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01331 ATGAAAACCTCAACCTCCTCCTCTAACTATCTGGTTCATTCACAACACAGTCTGGTTCGTTCCTCTACGCTTCGTTTTGCTTCACAAAGCTTCACACCAGGTCCTCTTTTTAGTTCTTGTACATCCTCTGCACTGAGTTCTGACATAGGCATGGGCCCTTCATGTCCTCTGTTCTGTTTCTCACATCTGTGTTTTTTGGTTGGCATTCAAGATGTTAGGGCAGAGGTTATGCCTGCAAGAAAGGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGTATAGTTGCAATGGTGGGTGATGGTATCAATGACTCTCCCGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGTACAGATATTGCAATAGAAGCTGCTAACTATGTGTTGATGAGGGATAATTTGGAAGATGTGATCACAATCATTGATCTTTCTAGGAAGACCTTTTCTCGTATACGATTGAATTATGTATTCGCGATGGCCTATAATATTATTGCTGTACCGATTCTTTCTGGGGTTTTATTTCCTTCATTGGGGATCGAGTTGCCGCCATGGGTTCTTTGGTGCATGCATGGCTCTCTCATCCGTGAGTGTTGTGTGCTCTTCTTTGCTTCTCAGAAGATATAG 633 0.4329 MKTSTSSSNYLVHSQHSLVRSSTLRFASQSFTPGPLFSSCTSSALSSDIGMGPSCPLFCFSHLCFLVGIQDVRAEVMPARKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAANYVLMRDNLEDVITIIDLSRKTFSRIRLNYVFAMAYNIIAVPILSGVLFPSLGIELPPWVLWCMHGSLIRECCVLFFASQKI* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01331 210 Gene3D - 25 166 IPR023214 -
Rops4g01331 210 PRINTS P-type cation-transporting ATPase superfamily signature 121 133 - -
Rops4g01331 210 PRINTS P-type cation-transporting ATPase superfamily signature 98 117 - -
Rops4g01331 210 Pfam haloacid dehalogenase-like hydrolase 69 112 - -
Rops4g01331 210 PRINTS H+-transporting ATPase (proton pump) signature 70 86 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops4g01331 210 PRINTS H+-transporting ATPase (proton pump) signature 129 154 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops4g01331 210 PRINTS H+-transporting ATPase (proton pump) signature 98 114 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops4g01331 210 NCBIfam HAD-IC family P-type ATPase 74 180 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops4g01331 210 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 67 188 - -
Rops4g01331 210 SUPERFAMILY HAD-like 66 191 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01331 Rops-Chr4 34786023 34788765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01331 67 187 Primary Pumps ATPases AT5G44790 81.818 2.19e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01331 K17686 - gmx:100778219 222.631