Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01313 ATGGATGAAAACCCGAAAAGACAATGGTCCCTCGACGACTTCGAGATCGGTAAGCCTCTCGGTAAAGGGAAATTCGGTAGAGTCTACGTCGCCAGAGAGCTCAAGAGCAAATATGTGGTTGCATTGAAGGTTATTTTTAAAGAACAACTTGAAAAGTACAGAATTCATCATCAATTGAGGAGGGAGATGGAGATACAGATGAGTCTTAAACACCCGAACATCCTGCGTCTGTATGGTTGGTTTCATGATTCTGAGCGAGTTTTCTTGATTCTTGAATATGCTCATAATGGTGAGCTATACAAGGAGCTTAGCAAAAAGGGTCATCTCACTGAGAAGCAGGCTGCCACGTATATTTTAAGCCTCACAAAGGCATTGGCATATTGTCATGAGAAGCATGTTATTCACAGGGATATCAAGCCTGAAAATTTGTTGCTTGACCATGAGGGTCGTCTTAAAATTGCAGACTTTGGTTGGTCTGTACAGTCTAGAAGCAAAAGACATACCATGTGTGGAACATTGGATTATTTAGCACCCGAAATGGTTGAAAACAAAGCTCATGATTATGCAGTTGATAACTGGACTCTTGGTATCCTTTGTTATGAGTTCCTCTTTGGTGTTCCTCCATTTGAGGCTGAGAGTCAAGCTGATACCTTCAAAAGGATAATGAAGGTTGATTTAAGCTTCCCTTCTACCCCTGATGTTTCTATAGAAGTCAAAAATCTTATTAGTCGGCTCCTGGTAAAAGACTCCACAAGAAGGCTCTCACTTCAGAAGATAATGGAGCATCCTTGGATAGTAAAGAATGCAAATCCTATGGGTGTCTGCAAGCAGTAG 834 0.4137 MDENPKRQWSLDDFEIGKPLGKGKFGRVYVARELKSKYVVALKVIFKEQLEKYRIHHQLRREMEIQMSLKHPNILRLYGWFHDSERVFLILEYAHNGELYKELSKKGHLTEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLFGVPPFEAESQADTFKRIMKVDLSFPSTPDVSIEVKNLISRLLVKDSTRRLSLQKIMEHPWIVKNANPMGVCKQ* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01313 277 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 4 276 IPR030616 GO:0004672
Rops4g01313 277 Gene3D Transferase(Phosphotransferase) domain 1 98 274 - -
Rops4g01313 277 FunFam Serine/threonine-protein kinase ark1 6 276 - -
Rops4g01313 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Rops4g01313 277 CDD STKc_Aurora 13 266 - -
Rops4g01313 277 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Rops4g01313 277 SUPERFAMILY Protein kinase-like (PK-like) 8 269 IPR011009 -
Rops4g01313 277 Pfam Protein kinase domain 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01313 277 PIRSF ILK 2 266 - -
Rops4g01313 277 ProSiteProfiles Protein kinase domain profile. 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01313 277 FunFam Aurora kinase A 6 97 - -
Rops4g01313 277 ProSitePatterns Protein kinases ATP-binding region signature. 20 47 IPR017441 GO:0005524
Rops4g01313 277 SMART serkin_6 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01313 Rops-Chr4 34569363 34572060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01313 6 271 CBL-interacting serine-threonine protein kinases AT5G10930 39.927 3.94e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Rops4g01313 Pkinase 2.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01313 K08850 - gmx:100775802 528.48