Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01311 ATGGAAGCTAAGCCTCTTAGAATTGTTCCCTCTTCACACAACACAACTGGGGTAGGAGGTGGACCCCAGAAGAAGACTGACATGGGGCACTTGATGGAGGGTGGTGTAGTTGATGAAGAAAGGAAGAGGGTTGTTGTTCTTTTGAAGGAAGAGAACTCTTCTTCCACTGTTGAGCTCGATCTTGGGGTTGGTGCTGCTCACTCTGCACCACAACCAGAAGAAGCAATAAACCCTGTGATCACATCATGCCCCTTAAAGTGCTGTCTCTTCACAGAGTCTCAGAGGCGTGAACTTGACCATCAAGTTTTCATCTTCAATCACTTTGCCTATAACCTTCCTCTTCCTCACCATCTTGTCCAATTTCCAAGCAATATGTCAGAATACAGGAGCCAGGGTTTTGATTATGGGAACATGGTGGATCCAGAACCACATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGCAGTAAGAATGTAGTGCCTGATCAGAAATACTGTGAACGCCACATGCATAGGGGTCGAAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACTCTCCTTTGACAACAAAGCCTTGTAGCAAGTCACATAACAAATTAGGCTCAAACACTGAATCTGCAGTTTCAAATCCAAACCTTTTGGCCATTCAACCCAGTGACACATCAAGGAGCCTTTGTAATTTAGATACCTCTTCTGGTAATAGGTTGAGAAATGTTGTCATGGGTTCTGCTGACTATCACACCTCTTTTTCTCATGCCACTGTGGTGACCCCTTGCTCAACTCTTGCCACTTCAGTTGCACCTAAAGTGACCACTTCTAGCAGCATGGCATCTGTTACTTCAGATAGCAAAAGTCACCAAAATGTATGCAAGAAAGATGAGCAGATCAAGAGCTTTTCCAGCAACAAGATCATTATTAAATGTGGTGGGAAAGGAAGCATTGTTTGTGATAGTAATGTCATCTCTACTGGAATAGGCTTCTCCCCAAGGAGTGTTCTTCAAGTTTCTGGTTGCAATGGTTCATACATCAATGACAAAAACAGCATAGAACCTGAACCCGGTAGGTGCAGAAGAACAGATGGTAAGAAGTGGAGGTGCAAGAGTGCTGTTCTTCCTGGTCAGAAATATTGTGCAACACACATGCACAGAGGTGCTAAAAAACGTTTCACAAACCATGAACAAGCTACTACTACTCCTAATTCTGCAGTTACCATTGCTCGGTTGCCTTACCCTTCTTCAGCCACAACCAACATTCAGAAAGCTTATTGTAAAATTCCAAATACAAAACTTTCAATGTCAGTCCCAGCAAGTGCACCCTTCATACAATGTAATGAAAAAAGTGCTAGTAGCAGTGACAGTGATACCACCATCACTGACACCTTGAATGAGTGTGGTACTAGTAGCTATGTTTCTTTCTAA 1428 0.4307 MEAKPLRIVPSSHNTTGVGGGPQKKTDMGHLMEGGVVDEERKRVVVLLKEENSSSTVELDLGVGAAHSAPQPEEAINPVITSCPLKCCLFTESQRRELDHQVFIFNHFAYNLPLPHHLVQFPSNMSEYRSQGFDYGNMVDPEPHRCRRTDGKKWRCSKNVVPDQKYCERHMHRGRNRSRKPVETSQVNSPLTTKPCSKSHNKLGSNTESAVSNPNLLAIQPSDTSRSLCNLDTSSGNRLRNVVMGSADYHTSFSHATVVTPCSTLATSVAPKVTTSSSMASVTSDSKSHQNVCKKDEQIKSFSSNKIIIKCGGKGSIVCDSNVISTGIGFSPRSVLQVSGCNGSYINDKNSIEPEPGRCRRTDGKKWRCKSAVLPGQKYCATHMHRGAKKRFTNHEQATTTPNSAVTIARLPYPSSATTNIQKAYCKIPNTKLSMSVPASAPFIQCNEKSASSSDSDTTITDTLNECGTSSYVSF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01311 475 ProSiteProfiles QLQ domain profile. 89 124 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops4g01311 475 MobiDBLite consensus disorder prediction 181 209 - -
Rops4g01311 475 Pfam WRC 354 393 IPR014977 -
Rops4g01311 475 Pfam WRC 141 183 IPR014977 -
Rops4g01311 475 ProSiteProfiles WRC domain profile. 140 184 IPR014977 -
Rops4g01311 475 MobiDBLite consensus disorder prediction 1 29 - -
Rops4g01311 475 ProSiteProfiles WRC domain profile. 353 398 IPR014977 -
Rops4g01311 475 MobiDBLite consensus disorder prediction 173 209 - -
Rops4g01311 475 PANTHER GROWTH-REGULATING FACTOR 5 345 446 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01311 Rops-Chr4 34555055 34558332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01311 93 414 GRF Transcription Factor Family AT2G45480 32.500 1.51e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01311 - - gmx:100795050 595.504