Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01294 ATGGATCCAGTTGCAGCACAAGGGCGTCCTCTTCCTCCTCCTTTTCTCACTAGAGACCTTCACCTACACCCTCACCCTCACCCTCATCACCAATTCCACAACCACCAGACCGCTGAAGAAGAACAACGACAAAACTCCAACAACAACAATGGACTCAAACGAGATCGAGAAGACAACACCAACACCAACAACATCACTACCTCGGATGGTGGACAAGAAGAAGGTAGTGGTGGTGGTGGTAGTGGTGGTGATGTGTCGAGAAGACCAAGAGGAAGACCCGCAGGTTCAAAGAACAAACCAAAACCACCGATCATCATCACAAGAGACAGTGCCAACGCTCTCCGATCCCATGTTATGGAAATCGCCAACGGTTGTGACATCATGGAAAGTGTAACCGTCTTTGCTCGCCGGAGACAGCGTGGCGTTTGTGTCCTCAGTGGTAGCGGCACCGTCACCAATGTTACTCTTCGTCAACCTGCTTCTCCCGGTGCAGTTGTCACCCTCCATGGAAGGTTTGAGATTCTCTCTCTTTCAGGATCTTTCCTGCCACCGCCAGCACCTCCCGCTGCCTCCGGCCTGGCTATATACCTGGCCGGAGGACAAGGACAGGTTGTCGGCGGCAGCGTGGTGGGACCGTTGTTAGCCTCCGGTCCCGTTGTTATCATGGCTGCTTCTTTTGGGAATGCCGCGTATGAAAGGTTGCCCTTGGAGGAAGAGGAAACCGCGATGACCGCACCTGGAGGATTAGGGTCACCGGGTATAGTGTCGCAACCGCAATCGCAACCGCAACAGCAGCAGGAACAACAATTTGTGCCAGATCCTAATACTAATCTTTTCCATGGAGTGCCACAAAATCTTCTCAATTCATGTCAATTACCAGCTGAGGGTTATTGGGGTGGCAGTGCTCGCCCTCCTTTTTAA 921 0.5233 MDPVAAQGRPLPPPFLTRDLHLHPHPHPHHQFHNHQTAEEEQRQNSNNNNGLKRDREDNTNTNNITTSDGGQEEGSGGGGSGGDVSRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTVFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEEEETAMTAPGGLGSPGIVSQPQSQPQQQQEQQFVPDPNTNLFHGVPQNLLNSCQLPAEGYWGGSARPPF* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01294 306 MobiDBLite consensus disorder prediction 253 282 - -
Rops4g01294 306 CDD DUF296 115 182 IPR005175 -
Rops4g01294 306 MobiDBLite consensus disorder prediction 1 106 - -
Rops4g01294 306 MobiDBLite consensus disorder prediction 243 282 - -
Rops4g01294 306 FunFam AT-hook motif nuclear-localized protein 114 241 - -
Rops4g01294 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 244 - -
Rops4g01294 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 115 227 IPR005175 -
Rops4g01294 306 PIRSF ESCAROLA 21 306 IPR014476 GO:0003680
Rops4g01294 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 274 IPR014476 GO:0003680
Rops4g01294 306 ProSiteProfiles PPC domain profile profile. 111 247 IPR005175 -
Rops4g01294 306 Gene3D - 114 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01294 Rops-Chr4 34335697 34336617 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01294 1 306 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 63.467 1.56e-90 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01294 - - jre:108980480 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01294 4 34335697 34336617 Rops4g01294 4 34335697 34336617 ECH