Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01290 ATGAGTAGTATAAACTCTAGTAGTAGTGGAAGTGGTGGTGGTGGTAGTGGAAGCAATAGTGGTGGTGGTGGTCCTTGTGGTGCTTGCAAGTTCTTGAGGAGAAAGTGTGTACCAGGTTGTATCTTTTCACCGTACTTTGATTCAGAGCAAGGTGCTACACACTTTGCAGCAGTGCACAAGGTTTTCGGGGCTAGCAACGTTTCAAAGTTGCTACTCAACATTCCAGTGCATAAGCGTCTTGATGCAGTGATCACCATTTGTTATGAAGCACAAGCGAGGCTGAGAGACCCTGTTTATGGTTGTGTTGCTCATATATTTGCTCTTCAACAACAGGTGATGAGTTTACAAGCAGAACTCTCCTACTTACAAGGCCACCTTGCCTCATTAGAGTTACCCCAACCACCACCACCACCTTCGCCACCACAAGCAACCATAGCTCCACCAACGATTTCAATAACAAGCCTCCCATCAGCCACTACCTCCGTCGTGCCAGCCACATATGACTTATCTTCACTTTTTGATCCCATGGCCCAAACTTCTTCATGGGCCATGCATCAGAGGCCCATGGACCCACGTCAATATTTGGGTAGTGGCCCATCAGCCACTAGCACTAGTGGTGGTGATCTTCAAGCTTTGGCTCGTGAGCTTTTGCATAGACATGGATCTTCTGCTCCTATGGCATGCTCAAATGCATCTTCATCTCACTCTCTTTCCAAATGA 720 0.4722 MSSINSSSSGSGGGGSGSNSGGGGPCGACKFLRRKCVPGCIFSPYFDSEQGATHFAAVHKVFGASNVSKLLLNIPVHKRLDAVITICYEAQARLRDPVYGCVAHIFALQQQVMSLQAELSYLQGHLASLELPQPPPPPSPPQATIAPPTISITSLPSATTSVVPATYDLSSLFDPMAQTSSWAMHQRPMDPRQYLGSGPSATSTSGGDLQALARELLHRHGSSAPMACSNASSSHSLSK* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01290 239 MobiDBLite consensus disorder prediction 130 149 - -
Rops4g01290 239 MobiDBLite consensus disorder prediction 1 20 - -
Rops4g01290 239 MobiDBLite consensus disorder prediction 130 145 - -
Rops4g01290 239 Pfam Lateral organ boundaries (LOB) domain 25 123 IPR004883 -
Rops4g01290 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 22 147 - -
Rops4g01290 239 MobiDBLite consensus disorder prediction 1 18 - -
Rops4g01290 239 MobiDBLite consensus disorder prediction 189 214 - -
Rops4g01290 239 ProSiteProfiles LOB domain profile. 24 126 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01290 Rops-Chr4 34246698 34249936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01290 27 239 AS2 family AT2G45420 61.947 7.98e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops4g01290 LOB 4.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01290 K21994 - gmx:100779541 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02157 8 49955346 49964185 Rops4g01290 4 34246698 34249936 PCT