Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01288 ATGGATTGTGGGGGTAAGATTGGTGGAAGTGAGAGAGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGGAGAAAGTGTGTGAAGGGTTGCATATTTGCACCTTACTTTGACTCAGACCAAGGAACTGCTCATTTTGCTGCAGTGCATAAGGTGTTTGGTGCTAGCAATGCCTCCAAGTTACTCATGCGTATTCCTGCTCATAAGCGTCTTGATGCTGTTGTTACTCTTTGCTATGAAGCTCTGGCTAGGGCTAGAGACCCAGTTTATGGTTGTGTTGGTCACATCTCTGCCCTTCAACAACAGGTCATCAACTTGCAGGCAGAGTTAACATATGTTCAAGCCCGTCTTGCCACAATGCAGCACCCCCCAATTCCTATAGCTCCTCTTCCACACCCTCAAACCTCTTCACCACCAAGTCTTCATTCCTCCTCGGATCACTTAACATTAATTGCTGATTTGCAAAGTGCCTCTAACATTACTACTAACTTTGATCCTCTTCAACCAAATTCAGTACCATTACAATTACTAAACAGCTATTTCGATACATCAGACCACCAACTAGAGGATGGGGAACTCCAAGCTTTGGCTCGAGAATTTGTGTCTAGGTACCTGCCTGGTGTGAGATTCCAGCCTTCTAATTCCCACTAA 648 0.4568 MDCGGKIGGSERGGPCGACKFLRRKCVKGCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHISALQQQVINLQAELTYVQARLATMQHPPIPIAPLPHPQTSSPPSLHSSSDHLTLIADLQSASNITTNFDPLQPNSVPLQLLNSYFDTSDHQLEDGELQALAREFVSRYLPGVRFQPSNSH* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01288 215 Pfam Lateral organ boundaries (LOB) domain 15 113 IPR004883 -
Rops4g01288 215 Coils Coil 95 115 - -
Rops4g01288 215 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Rops4g01288 215 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01288 Rops-Chr4 34218787 34224848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01288 13 213 AS2 family AT4G00210 55.093 3.83e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops4g01288 LOB 2.1e-37 No_clan