Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01286 ATGGAAGCAAGAGAAGGTATCAGTTCTGGGGTTACAGTGATAGGTGCAGAAGCTCCATCAGCTTATCATGTTGCACCTAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCGGAAGCACCAACTGCTGCAGCAGCTGCAGTTGTTGGTGCTTCCCCGGTGAGTGTGGGGTTGGATGGAACATCATTTAAGAAGAAAAGAGGTAGACCAAGGAAATATGGACCAGATGGGTCTGTCACCATGGCATTGTCACCATTGCCAATCTCATCTTCGGCTCCTCCTTCTAATGACTTCTCATCCGGGAAGCGGGGCAAACCGCGTGGAATGGAATACAAGCAGGCAAAAAAACTTGGCTTGGATCATCATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAACTTTATGCCACATATCATCACTGTCAATACTGGAGAGGACATTACAATGAAGGTGATATCCTTTTCTCAACAAGGGCCCCGAGCTATATGCATCTTATCTGCTAATGGTGTAATTTCAAATGTTACGCTTCGTCAGCCAGATTCTTCAGGGGGTACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCGCTGGCAAGCCCCGATGGTCGTGTTGTAGGTGGTGGAGTTGCTGGCCTTCTGGTAGCCGCTAGTCCTGTCCAGGTGGTGGTGGGAAGTTTTCTACCAAGCAGCCAGCAAGAACAGAAACCAAAGAAGCCTAAGTCTGATTATGCACCACTAGCCACTGTTACTCCAGCCATTGCAGTATCTTCTGCACCACCACCACCACCCCCAACCAACACTGAAAAAGAGGATGTCATGGGTGGACATGTACTGCAAAATTCTGGTACCCTTAATTCAAGCCTTAATACTACTACTACTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTTAACATGCACTCTATGCCAGACTCAAGAAAGTCAGCTACTGATATTAACATATCTTTGCCTGATAGTTAA 1050 0.4733 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPEAPTAAAAAVVGASPVSVGLDGTSFKKKRGRPRKYGPDGSVTMALSPLPISSSAPPSNDFSSGKRGKPRGMEYKQAKKLGLDHHLGDLNACSDGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKPKKPKSDYAPLATVTPAIAVSSAPPPPPPTNTEKEDVMGGHVLQNSGTLNSSLNTTTTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01286 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 315 IPR039605 GO:0003680
Rops4g01286 349 MobiDBLite consensus disorder prediction 300 349 - -
Rops4g01286 349 FunFam AT-hook motif nuclear-localized protein 1-like 136 266 - -
Rops4g01286 349 ProSiteProfiles PPC domain profile profile. 131 272 IPR005175 -
Rops4g01286 349 MobiDBLite consensus disorder prediction 331 349 - -
Rops4g01286 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Rops4g01286 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 255 - -
Rops4g01286 349 MobiDBLite consensus disorder prediction 301 322 - -
Rops4g01286 349 CDD DUF296 136 226 IPR005175 -
Rops4g01286 349 MobiDBLite consensus disorder prediction 276 295 - -
Rops4g01286 349 MobiDBLite consensus disorder prediction 82 97 - -
Rops4g01286 349 Gene3D - 136 270 - -
Rops4g01286 349 MobiDBLite consensus disorder prediction 57 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01286 Rops-Chr4 34169202 34175152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01286 6 281 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 59.076 1.75e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01286 - - gmx:100793726 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01286 4 34169202 34175152 Rops4g01286 4 34169202 34175152 ECH
Rops8g02155 8 49863947 49874040 Rops4g01286 4 34169202 34175152 PCT