Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01261 ATGCTTCTTGTGTGTGCAAATTCTTCATACCAGCCATGGTCTTCAACCATTCCCACACTCATCATGTTCCCAAAATGCACAACCACAGAACACGTGAATCAAATCCATGCACGCATGATAACAACTGGGTTCATCAAAAACACTTCCCTTACCACCAAGCTCATCCTCACTTTCATTTCTTCACCCCATAAGCCCCTTGTTGAGTTTGCACGTTACATCTTCTTCAAGCACCATGCTTTTCAAAGTCCTCATTATCAAGATGACCCTTTTCTTTGGAATGCTGTTATCAGGTCTTACTCTCATGGTTGTGACCCAAAAGGGGCTCTGTTTTTGCTCTGTTTGATGCTTCAAAATGGGGTCTTTTTGGATAAGTACTCATTTTCCCTTGTTTTGAAGGCTTGTTCTCAAATGGGTTTGATGAAAGAAGGAATGCAGGTTTATGGGTTGTTGTGTAAGACAGATATTGTGTCTGATGTGTTTGTGCAGAATTGTTTGATTGGATTGTTTGTGAGATGTGGGTGTGTTGGGCTTGCTCAGCAAGTGTTTGACAGAATGCCTGGGAAGGATTCTGTTTCTTATAACTCTTTGATTGATGGGTATGTGAAATGTGGGGGTGTTGAAAGAGCAAGTGAGTTGTTTGATGGTATGCCACCAGAGCTTAAGAATTTGATTACTTGGAATTCAATGATTGGAGGGTATGTGAGATGTGAAGATGATGGGTTGAAGTTTGCTTGGAGTTTGTTTCTTAAAATGCCTGAGAGGGACTTGGTTTCTTGGAACACAATGATTGATGGTTGTGTGAAGCATAGGAAGATGGAGGATGCTCAAGTTTTGTTTGATGAGATGCCGGAAAGGGATTTGGTAAGTTGGGCTACTATGATTGATGGGTATGCAAAATCCGGTGATGTTCTTGTTGCGAGGAGTTTGTTTGATGAAATGCCCAGGAGAGATGTCATTTCTTGTAACACAATGATGTCTGGCTATGTTCAGAATGGGTATTGCATTGAGGCTTTGAAACTATTTCATGATATGGGAAGGGCAACAAATATGTTACCTGATGATACAACGTTGTTGATTGTTCTTACAGCAATTGCACAATTAGGACATGTTGAAGATGGAGTTGTGATACACCGTTATTTAATGGATAATGGTTACTCTCTGAGTGGTAAACTTGGTGTTTCTCTGATTGACATGTATTCCAAGTGTGGTAGCATTGAGAATGCTATCTCAGTGTTCGAGAATATTGAACAAAAATGTGTGGATCATTGGAATGCTGTGATTGGTGGCTTAGCTGTTCATGGAATGGGTGAAATGGCTTTTGATTTTCTCATGGAGATGGAAAGGCTTTCAATTGTACCTGATGATATCACATTCATTGGAGTGTTGAGTGCTTGTAGGCATGCTGGAATGTTGAAGGAGGGACTTGTATGTTTTGAGCTCATGAAAAATGTATACAAGCTGGAACCTAAAGTGCAACACTATGGATGCATGGTGGATATGCTTAGCCGAGCAGGGTATGTTGAAGAAGCCAAGAAACTCATTGAGAAGATGCCTATTGAACCCAATGATGTGATTTGGAAGACTTTGCTTAGTGCTTGCCAAATACATGAAAACTTCTCTATAGGAGAGCCTATAGCTCAGCAATTGATTCAGCTAAATTCATGCAGTCCAGGTTCCTATGTGCTCCTGTCTAATATTTATGCCAGTTTGGGCAAGTGGGACAATGTTAAAAGGGTTAGGACTGAAATGAAAGAAAGAGATTTAAAGAAAATTCCTGGTTGTAGTTGGATTGAACTGGGGGGAACCGTTCACCAGTTCTCTGTACAAGATAGGACACACCCTCAGGTTACTGAGATTTATTCTCTGTTAAAAAGCGCAGCAAGCAGAGAGCGTTGTCTTTCACAACCACTCACCATGGGGCGTATGCACAGTCGTGGTAAGGGTATTTCAAGTTCAGCTCTTCCTTATAAGAGGACTCCACCCAGTTGGCTCAAGATCTCTTCTCAGGATGTTGAGGAGAACATCTGCAAGTTTGCCAAGAAAGGTCTGACTCCATCTCAAATTGGTGTTATTCTTCGTGACTCTCATGGAATTGCTCAGGTCAGGAGTGTCACCGGAAGCAAGATTTTGCGCATATTGAAGGCCCATGGTCTTGCTCCTGAAATCCCTGAAGATCTGTACCACCTGATCAAGAAGGCAGTCTCAATTAGGAAGCACTTGGAGAGGAATAGGAAGGACAAAGACTCTAAATTCAGATTGATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTACAAGAAGACAAAGAAACTTCCACCAGTATGGAAATATGAATCAACAACTGCCAGCACCCTTGTGGCTTAG 2370 0.4173 MLLVCANSSYQPWSSTIPTLIMFPKCTTTEHVNQIHARMITTGFIKNTSLTTKLILTFISSPHKPLVEFARYIFFKHHAFQSPHYQDDPFLWNAVIRSYSHGCDPKGALFLLCLMLQNGVFLDKYSFSLVLKACSQMGLMKEGMQVYGLLCKTDIVSDVFVQNCLIGLFVRCGCVGLAQQVFDRMPGKDSVSYNSLIDGYVKCGGVERASELFDGMPPELKNLITWNSMIGGYVRCEDDGLKFAWSLFLKMPERDLVSWNTMIDGCVKHRKMEDAQVLFDEMPERDLVSWATMIDGYAKSGDVLVARSLFDEMPRRDVISCNTMMSGYVQNGYCIEALKLFHDMGRATNMLPDDTTLLIVLTAIAQLGHVEDGVVIHRYLMDNGYSLSGKLGVSLIDMYSKCGSIENAISVFENIEQKCVDHWNAVIGGLAVHGMGEMAFDFLMEMERLSIVPDDITFIGVLSACRHAGMLKEGLVCFELMKNVYKLEPKVQHYGCMVDMLSRAGYVEEAKKLIEKMPIEPNDVIWKTLLSACQIHENFSIGEPIAQQLIQLNSCSPGSYVLLSNIYASLGKWDNVKRVRTEMKERDLKKIPGCSWIELGGTVHQFSVQDRTHPQVTEIYSLLKSAASRERCLSQPLTMGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01261 789 Pfam E motif 536 598 IPR046848 -
Rops4g01261 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 347 IPR002885 -
Rops4g01261 789 Pfam Ribosomal S13/S15 N-terminal domain 639 698 IPR012606 GO:0003735|GO:0005840|GO:0006412
Rops4g01261 789 CDD Ribosomal_S15p_S13e 708 781 IPR000589 GO:0003735|GO:0005840|GO:0006412
Rops4g01261 789 Gene3D Tetratricopeptide repeat domain 392 616 IPR011990 GO:0005515
Rops4g01261 789 FunFam Pentatricopeptide repeat-containing protein 393 638 - -
Rops4g01261 789 SMART Ribosomal_S15_2 708 787 IPR000589 GO:0003735|GO:0005840|GO:0006412
Rops4g01261 789 SMART Ribosomal_S13_N_2 639 698 IPR012606 GO:0003735|GO:0005840|GO:0006412
Rops4g01261 789 ProSitePatterns Ribosomal protein S15 signature. 736 766 IPR000589 GO:0003735|GO:0005840|GO:0006412
Rops4g01261 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Rops4g01261 789 Pfam PPR repeat 394 418 IPR002885 -
Rops4g01261 789 Pfam PPR repeat 191 216 IPR002885 -
Rops4g01261 789 Pfam PPR repeat 163 188 IPR002885 -
Rops4g01261 789 Pfam PPR repeat 224 253 IPR002885 -
Rops4g01261 789 Pfam PPR repeat 494 517 IPR002885 -
Rops4g01261 789 Pfam PPR repeat 257 286 IPR002885 -
Rops4g01261 789 Pfam PPR repeat 91 120 IPR002885 -
Rops4g01261 789 Pfam PPR repeat 125 149 IPR002885 -
Rops4g01261 789 SUPERFAMILY S15/NS1 RNA-binding domain 704 780 IPR009068 -
Rops4g01261 789 FunFam 40S ribosomal protein S13 673 720 - -
Rops4g01261 789 Pfam Ribosomal protein S15 712 781 IPR000589 GO:0003735|GO:0005840|GO:0006412
Rops4g01261 789 NCBIfam pentatricopeptide repeat 191 216 IPR002885 -
Rops4g01261 789 NCBIfam pentatricopeptide repeat 257 288 IPR002885 -
Rops4g01261 789 NCBIfam pentatricopeptide repeat 319 353 IPR002885 -
Rops4g01261 789 NCBIfam pentatricopeptide repeat 423 454 IPR002885 -
Rops4g01261 789 NCBIfam pentatricopeptide repeat 288 318 IPR002885 -
Rops4g01261 789 NCBIfam pentatricopeptide repeat 91 123 IPR002885 -
Rops4g01261 789 Pfam PPR repeat family 419 465 IPR002885 -
Rops4g01261 789 Pfam PPR repeat family 316 364 IPR002885 -
Rops4g01261 789 Gene3D - 673 720 - -
Rops4g01261 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Rops4g01261 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Rops4g01261 789 Gene3D Tetratricopeptide repeat domain 220 285 IPR011990 GO:0005515
Rops4g01261 789 Gene3D Tetratricopeptide repeat domain 156 219 IPR011990 GO:0005515
Rops4g01261 789 Gene3D Tetratricopeptide repeat domain 66 155 IPR011990 GO:0005515
Rops4g01261 789 Gene3D Tetratricopeptide repeat domain 286 375 IPR011990 GO:0005515
Rops4g01261 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 219 IPR002885 -
Rops4g01261 789 Hamap 30S ribosomal protein S15 [rpsO]. 641 787 IPR023029 -
Rops4g01261 789 FunFam 40S ribosomal protein S13 721 789 - -
Rops4g01261 789 Gene3D - 721 789 - -
Rops4g01261 789 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 268 628 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01261 Rops-Chr4 33528575 33534995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01261 639 789 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 93.377 2.33e-95 292