Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01260 ATGGCAAGCTCTGTTTGCAATTTACTAGTGGTGACGCTTGCCTCTTATGTTTTCTTACTACAAGCTGTTATTGCTACCAGTATGGTAGCTTCTAATTCCTCATCCAAAAATGAGGAACAGGAGGCTTTGCTCCAGAGCAGGTGGGGAGAAGGGCGAAATATATCAGATTATTGTAAATGGAATGGTATTAAGTGTAATGAAGTTGGAAGTATTATAGAGATTTCAACAAGGCATTATTTTTATGTTCCTCCAACAGAGCTGCAGATTCAGAACTTCAATGTGACTGCATTCCCAAATTTAATCCGTCTAGAACTTAGTGCTTTGGGACTCAAAGGAAGCATCCCCACAGAAATAAGCTCTCTTACGAAGCTTACGTATCTTAACCTGTCCTCCAATTGTCTTCAAGGTGAGTTGCCTAGTCCACTTTCAAATCTCACTCAACTGAAGACACTTGATATTTCTAACAATTTTCTTACTGGTGTGATCCCTTCTACTTTGGGTCAACTAAAGTATCTCACCAAACTCTCTCTTGACTCGAACCAAATTGAAGGCACCATCCCTGCAGAACTAGGGAATTCAAAAGGTTTGGAGCAACTAACTCTTTCAGATAACTTACTCAATGGTTCAATCCCTTCTACTTTAGAGCACTTGATCCAGCTCAAAGTTTTAGATCTTTCTCATAATAAGATTTTTGGTGTTATACCAGAAGGGATATCTGCACTAACACAGCTCACAAATGTTAATCTATCTTGGAATCAAATAACTGGTTCCATCCCATCTGGGATTGGACAAATCCCAAGACTTGAAATTTTAGATATTTCCAACAATAGGCTTGAGGGACCCATCCCATATGGTATTTTAGACCACTGTAGTTATGTGCAGCTAAGTAACAACTCTTTAAATGGTAGCATTCCTTCTCAAATTGGCAATATTTCTTATCTAGATCTTAGTTATAATGACCTCACAGGCAGCATACCTCAGGGCCTTGATTTTGTACCACACCTCAATTTGTCTTACAATTCCTTTGACCGTTCAGAAGGCAGATTTTGCAGATTTCCAAAGGATTCATTAATTGGTAATCAGAATTTTGGTTTTCAATGCACTGCTGTTCCTTATTCTTCAACATTAATGTTGGTTGTCTTGTCTGCTATCTGCGGCGTGGTCTTTTCAGCAGTCTTCGTAGGTTGGGGAATTCATATTTTTTGTCCCCCATATGATAAGAATGAAAATAAGGAAAGAAGAAAGAATGGTGACATGCTCTCAATTTGGAACTTTGATGGTAAAATTGCATTTGAAGACATAATTAAAGCCACAGAGGACTTTGATATCAGGTATTGCATAGGAACAGGTGCTTATGGAAGTGTATACAAAGCACAACTTCCTAGTGGTAGAATTGTTGCACTGAAGAAGCTTCACAAAACAGAATCTGAAAATCCATCCTTCTACAAGAGTTTCTGTAATGAGGTTAAGATCTTGACAAAAATTCGTCATCGTAACATCATTAGGCTTTATGGTTTTTGCTTGCATAACAAGTGCATGTTCTTGGTGTATGAGTATATGGAAAGGGGTAGCTTATTTTACAACTTGTCCAATGATGTGGAAGCTCAAAAATTGAATTGGAAAACGAGGATAAATATTGTGAAAGAGATAGCCTATGCCCTGGCTCACATGCATCATCATTGTACTCCACCTATTGTTCATCGAGATGTAAGCAGTAACAATGTTTTGTTGAACATGGAGTTACAGGCTTTTGTCTCAGACTTTGGCACAGCAAGACTTCTTGATTGCCATTCATCTAATCAAAGTATTCTTGTTGGTACTCGTGGATATGTGGCTCCGGAATTGGCTTACTCCTTGACTGTGACTCCAAAACGTGATGTTTATAGCTTTGGAGTGGTGGCTTTAGAAACAATGATGGGAAGACACCCAGCTGAATTGATTTCCTCTTTGCCAGAACCATCTATTCAAAACATGAAGCTGAAAGATATATTGGACTCACGTATTCCACTACCCTTTTTTCGAAAAGATATGCAAGATATTGTGCTTGTTGTAACATTAGCATTGGCATGCCTTAGCCCCGACCCAAAATCAAGACCATCAATGCAGGAAGTAGCTAATGAGCTTTTAGTTTCCACGCCACCGTTGCTTTGGCATTTTTATGACATTTCAATCCACCAATTGATGACTCAAAAAATATATGCAATAGTGAATAAACAACTGGGAGCACTCTTGTGGCTTAGAATGAGATGCTTGGTGATAGAGTTCTACTCTGGAGCTTCTAATTCCTCATCCATAAATGAGGAACAAGAGGCTTTGCTTCACAGCAGGTGGGTAGAAGGTCGAAATATCTCAGAATATTGTAAATGGAATGGTATTAAGTGTAATGAAGTTGGAAATATTATAGAGATTTCAACTGGGCGTTATTTTTATGTTCCTCCAACAGAGCTGCAGATTCAGAACTTCAATGTGACTGCATTCCCAAATTTAATCCATCTAGAACTTAGTGGGTTGGGACTCAAAGGAAGCATCCCCACAGAAATAAGCTCTCTCACAAAGCTTATGTATCTTGACCTGTCCTCTAATTGTCTTCAAGGTGAGTTGCCTAGTCCACTTTCAAATCTCACTCAACTGAAGACACTTGATATTTCTAACAATTTTCTTACCGGTGTGATCCCTCCTACTTTGGGTCAATTGAAGTATCTGACCAAACTCTCCCTTGACTCAAACCAAATTGAAGGCACCATCCCTGCAGAACTAGGGAATTCAAAAGGTTTGGAGCAACTAACTCTTTCAAATAACTCACTCAATGGTTCAATCCCTTCTACTTTAGAGCACTTGATCCAGCTCAAAGTTTTAGATCTTTCTCATAATAAGATTTTTGGTCATATACCTGAAGGGATATCTGCACTGACACAACTGACAAATGTTAATCTATCTTGGAACCAAATAATTGGTTCCATCCCATCTGGGATTGGACAAATCCCAAGACTTGAAATTTTAGATATTTCCAACAATAGGCTTGAGGGACCCATCCCATATGGTATTTTAGACCACTGTAGTTATGTGCAGCTAAGTAACAACTCTTTACATGGAACCATTCCTTCTCAAATTGGCAATATTTCTTATCTAGATCTTAGTTATAATGACCTCACAGGCAGCATCCCTCAGGGCCTTCATTCTGTACCACACCTCAATTTGTCTTACAATTCCTTTAACAATTCATATGGCAGTTTTTGTGGTTTTCCAAAAGACTCATTAATTGGTAATCAGAATTTTGGTATCTCGTGCTCTTCTTCTCCTCGTATTTCTATGTTAGTGTTGGTTGTCTTGTCTGCAATCAACGGCATGGTATTTTCAACACTCTTTGTATGTTGGGGAATTCACGTTTTTTGTCCCCCATATGATATGTTTGGAAATGAGGAAAGAAGAAAAAACGGTGACATGCTCTCAATTTGGAACTTTGATGGTAAAATTGCATTTGAAGACATAATTAAAGCCACGGAGGACTTTGATATCAGGTATTGCATAGGAACAGGTGCTTATGGAAGTGTATACAAAGCACAACTTCCTAGTGGTAGAATTGTTGCACTGAAGAAGCTTCACCAAACAGAATCTGAAAATCCATCCTTCTACAAGAGTTTTTGTAATGAGGTTAAGATCTTGACAAAAATTCGGCATCGTAACATCATTAGGCTTTATGGCTTTTGCTTGCATAACAAGTGCATGTTTTTGGTGTATGAGTATATGGAAAGGGGTAGCTTATTTTACAACTTGTCCAATGATGTGGAAGCTCAAGAATTGAATTGGAGCAAGAGGATAAATATTGTAAAAGAGATAGCCTATGCCCTGGCTCACATGCATCATCATTGTACTCCACCTATTGTTCATCGAGATGTAAGCAGTAACAATGTTTTGTTGAACATGGAGTTACAGGCTTTTGTCTCAGACTTTGGCACAGCAAGACTTCTTGATTACCATTCATCTAATCAAAGTATTCTTGTTGGTACTCGCGGATATGTGGCTCCAGAATTGGCTTACACCTTGACTGTGACTCCAAAACGTGATGTTTATAGCTTTGGAGTGGTGGCTTTAGAAACAATGATGGGAAGACACCCAGCTGAATTGATTTCCTCTTTGTCTGAACCATCTGTTCAAAGCATGAGGCTGAAAGATATATTGGACTCACGTATTCCACTACCCTTTTTTCGAAAAGATATGCAAGATATTGTGCTTGTTGTAACATTAGCATTGGCATGCCTTAGCCCCGACCCAAAATCAAGACCATCAATGCAGGAAGTAGCTAATGAGCTTTCAGTTTCCACGCCACCATTGCTTTGGCATTTTTATGACATTTCAATCAACCAATTGATGAATCAAAAAATATATGTAGTTGGTAAAAGTTAG 4404 0.386 MASSVCNLLVVTLASYVFLLQAVIATSMVASNSSSKNEEQEALLQSRWGEGRNISDYCKWNGIKCNEVGSIIEISTRHYFYVPPTELQIQNFNVTAFPNLIRLELSALGLKGSIPTEISSLTKLTYLNLSSNCLQGELPSPLSNLTQLKTLDISNNFLTGVIPSTLGQLKYLTKLSLDSNQIEGTIPAELGNSKGLEQLTLSDNLLNGSIPSTLEHLIQLKVLDLSHNKIFGVIPEGISALTQLTNVNLSWNQITGSIPSGIGQIPRLEILDISNNRLEGPIPYGILDHCSYVQLSNNSLNGSIPSQIGNISYLDLSYNDLTGSIPQGLDFVPHLNLSYNSFDRSEGRFCRFPKDSLIGNQNFGFQCTAVPYSSTLMLVVLSAICGVVFSAVFVGWGIHIFCPPYDKNENKERRKNGDMLSIWNFDGKIAFEDIIKATEDFDIRYCIGTGAYGSVYKAQLPSGRIVALKKLHKTESENPSFYKSFCNEVKILTKIRHRNIIRLYGFCLHNKCMFLVYEYMERGSLFYNLSNDVEAQKLNWKTRINIVKEIAYALAHMHHHCTPPIVHRDVSSNNVLLNMELQAFVSDFGTARLLDCHSSNQSILVGTRGYVAPELAYSLTVTPKRDVYSFGVVALETMMGRHPAELISSLPEPSIQNMKLKDILDSRIPLPFFRKDMQDIVLVVTLALACLSPDPKSRPSMQEVANELLVSTPPLLWHFYDISIHQLMTQKIYAIVNKQLGALLWLRMRCLVIEFYSGASNSSSINEEQEALLHSRWVEGRNISEYCKWNGIKCNEVGNIIEISTGRYFYVPPTELQIQNFNVTAFPNLIHLELSGLGLKGSIPTEISSLTKLMYLDLSSNCLQGELPSPLSNLTQLKTLDISNNFLTGVIPPTLGQLKYLTKLSLDSNQIEGTIPAELGNSKGLEQLTLSNNSLNGSIPSTLEHLIQLKVLDLSHNKIFGHIPEGISALTQLTNVNLSWNQIIGSIPSGIGQIPRLEILDISNNRLEGPIPYGILDHCSYVQLSNNSLHGTIPSQIGNISYLDLSYNDLTGSIPQGLHSVPHLNLSYNSFNNSYGSFCGFPKDSLIGNQNFGISCSSSPRISMLVLVVLSAINGMVFSTLFVCWGIHVFCPPYDMFGNEERRKNGDMLSIWNFDGKIAFEDIIKATEDFDIRYCIGTGAYGSVYKAQLPSGRIVALKKLHQTESENPSFYKSFCNEVKILTKIRHRNIIRLYGFCLHNKCMFLVYEYMERGSLFYNLSNDVEAQELNWSKRINIVKEIAYALAHMHHHCTPPIVHRDVSSNNVLLNMELQAFVSDFGTARLLDYHSSNQSILVGTRGYVAPELAYTLTVTPKRDVYSFGVVALETMMGRHPAELISSLSEPSVQSMRLKDILDSRIPLPFFRKDMQDIVLVVTLALACLSPDPKSRPSMQEVANELSVSTPPLLWHFYDISINQLMNQKIYVVGKS* 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01260 1467 FunFam Leucine-rich repeat receptor protein kinase MSP1 1136 1248 - -
Rops4g01260 1467 SMART LRR_sd22_2 217 240 - -
Rops4g01260 1467 SMART LRR_sd22_2 121 144 - -
Rops4g01260 1467 SMART LRR_sd22_2 946 969 - -
Rops4g01260 1467 SMART LRR_sd22_2 145 166 - -
Rops4g01260 1467 SMART LRR_sd22_2 169 198 - -
Rops4g01260 1467 SMART LRR_sd22_2 874 903 - -
Rops4g01260 1467 SMART LRR_sd22_2 850 873 - -
Rops4g01260 1467 Gene3D Phosphorylase Kinase; domain 1 405 519 - -
Rops4g01260 1467 Gene3D Phosphorylase Kinase; domain 1 1137 1248 - -
Rops4g01260 1467 Gene3D Transferase(Phosphotransferase) domain 1 1249 1443 - -
Rops4g01260 1467 SUPERFAMILY Protein kinase-like (PK-like) 1152 1437 IPR011009 -
Rops4g01260 1467 Gene3D Ribonuclease Inhibitor 919 1106 IPR032675 -
Rops4g01260 1467 SUPERFAMILY L domain-like 56 339 - -
Rops4g01260 1467 Gene3D Ribonuclease Inhibitor 759 918 IPR032675 -
Rops4g01260 1467 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Rops4g01260 1467 Gene3D Ribonuclease Inhibitor 287 369 IPR032675 -
Rops4g01260 1467 FunFam Leucine-rich repeat receptor-like protein kinase 1249 1444 - -
Rops4g01260 1467 Gene3D Ribonuclease Inhibitor 187 286 IPR032675 -
Rops4g01260 1467 ProSiteProfiles Protein kinase domain profile. 441 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01260 1467 ProSiteProfiles Leucine-rich repeat profile. 948 970 IPR001611 GO:0005515
Rops4g01260 1467 PANTHER LEUCINE RICH REPEAT KINASE 2 826 1441 - -
Rops4g01260 1467 ProSitePatterns Protein kinases ATP-binding region signature. 447 469 IPR017441 GO:0005524
Rops4g01260 1467 Pfam Protein kinase domain 1175 1435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01260 1467 Pfam Protein kinase domain 446 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01260 1467 SMART LRR_typ_2 121 144 IPR003591 -
Rops4g01260 1467 SMART LRR_typ_2 217 241 IPR003591 -
Rops4g01260 1467 SMART LRR_typ_2 994 1018 IPR003591 -
Rops4g01260 1467 SMART LRR_typ_2 265 289 IPR003591 -
Rops4g01260 1467 SMART LRR_typ_2 145 168 IPR003591 -
Rops4g01260 1467 SMART LRR_typ_2 874 898 IPR003591 -
Rops4g01260 1467 SMART LRR_typ_2 946 970 IPR003591 -
Rops4g01260 1467 SMART LRR_typ_2 169 193 IPR003591 -
Rops4g01260 1467 ProSitePatterns Tyrosine protein kinases specific active-site signature. 565 577 IPR008266 GO:0004672|GO:0006468
Rops4g01260 1467 FunFam Leucine-rich repeat receptor-like protein kinase TDR 820 1083 - -
Rops4g01260 1467 SUPERFAMILY L domain-like 786 1074 - -
Rops4g01260 1467 ProSiteProfiles Protein kinase domain profile. 1170 1445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01260 1467 ProSitePatterns Protein kinases ATP-binding region signature. 1176 1198 IPR017441 GO:0005524
Rops4g01260 1467 FunFam Leucine-rich repeat receptor-like protein kinase 520 714 - -
Rops4g01260 1467 PRINTS Leucine-rich repeat signature 217 230 - -
Rops4g01260 1467 PRINTS Leucine-rich repeat signature 148 161 - -
Rops4g01260 1467 SUPERFAMILY Protein kinase-like (PK-like) 421 708 IPR011009 -
Rops4g01260 1467 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 93 371 - -
Rops4g01260 1467 Gene3D Transferase(Phosphotransferase) domain 1 520 712 - -
Rops4g01260 1467 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1294 1306 IPR008266 GO:0004672|GO:0006468
Rops4g01260 1467 FunFam Leucine-rich repeat receptor protein kinase MSP1 405 519 - -
Rops4g01260 1467 Pfam Leucine rich repeat 852 911 IPR001611 GO:0005515
Rops4g01260 1467 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Rops4g01260 1467 Pfam Leucine rich repeat 924 983 IPR001611 GO:0005515
Rops4g01260 1467 Pfam Leucine rich repeat 195 254 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01260 Rops-Chr4 33516681 33526918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01260 100 613 Receptor kinase-like Gene Family AT4G08850 37.013 1.14e-103 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops4g01260 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01260 - - vun:114165534 1078.54