Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01228 ATGGCACATCAACTCAAACTTATATCACTAGTCCTTTTCCTCTCTCTTCTCTTTTCAATTCTTGCACCCGTTGAGCCTTCATTGGTCAGGCCTAAGTCCCAAACAAGGACCTACATAGAGTCCTCTTGCAAGGGCACCCTCTACCCAGATCTTTGCATTCGTTGCTTATCCAGATATGCCAATTCCAACATAGAAGGCCCGCACTACTTGGCACATGTTGCCTTGTCAGTGAGCCTATCCAGAGCACTGGAAACAAGAGGGTACCTATTGAAAGTGGCCAAAGAACTCAAGGCAATGAAGATCAACAAGAGGGAGTACCTAATAGTGCAAGATTGTGGGAATCAAATCAGTGATAGTGTGGAACAACTGAGCCAAGCCATCAAAGAACTAAGGAGGTTGAAGCAATTGAGGTCGTCCAGCATAAATGATAAAGTGTTGTGGCACATAAGTAACATAGAGACATGGGGGAGCACTGCCTTAACGGATGCAAGCAGTTGTGTGGAATCATTCCCTGGTCATAGGATGAGCAAGAGGGTTGCTTCTATTAAGGTTAAAGCCATAAATGTGGCACAAGTCACTAGTAACGCTCTTGCTTTGTTCCATAGATATGCATTAAGGTACCAGCAAGCAGCAGCTAGAACCATCAAGAAGCCCTGA 657 0.449 MAHQLKLISLVLFLSLLFSILAPVEPSLVRPKSQTRTYIESSCKGTLYPDLCIRCLSRYANSNIEGPHYLAHVALSVSLSRALETRGYLLKVAKELKAMKINKREYLIVQDCGNQISDSVEQLSQAIKELRRLKQLRSSSINDKVLWHISNIETWGSTALTDASSCVESFPGHRMSKRVASIKVKAINVAQVTSNALALFHRYALRYQQAAARTIKKP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01228 218 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 202 IPR035513 -
Rops4g01228 218 FunFam Pectinesterase inhibitor 3 34 204 - -
Rops4g01228 218 NCBIfam pectinesterase inhibitor domain 9 203 IPR006501 GO:0004857
Rops4g01228 218 Pfam Plant invertase/pectin methylesterase inhibitor 38 199 IPR006501 GO:0004857
Rops4g01228 218 Coils Coil 116 136 - -
Rops4g01228 218 CDD PMEI-like_3 41 204 - -
Rops4g01228 218 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 203 IPR035513 -
Rops4g01228 218 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 199 - -
Rops4g01228 218 SMART PMEI_2 34 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01228 Rops-Chr4 33012172 33012828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01228 24 200 Carbohydrate Esterase AT5G53370 24.457 7.22e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01228 - - gmx:100791798 301.982