Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01223 ATGGGGTCTTGTGCCACCGCTTTGTTCCTCCTCCTTGCCACCATAGCCACCACCACCACCACTTTTTGCCTCCAAGAAATGGAGGTGCTCCAAATGGCCCAAACCCAAGTTTCACAAGCCAAGAATTGGGTTGGTAACTCTGTGAGATTGCATGGCTTGGAAGGAAGCCTAAGCCTTTCAGATCAAACAAGTGTGGCTCTAAGTGATTGTGCCAAACTCTATGAGGAGAGTGAGTCTAGGCTCTCTCACTTGGTGTCACACTCTGACATGAGTAGTTACACCAAAGAAGATGCTCTTACTTGGGTTAGTGCTGTGATGACAAATCATATGACTTGTTTGGATGGTTTGAAGGAAAAAGGGTATGTTGAAGCTCATCATGTCTTGGGTGGAAACTTGACCATGTTGCTTGGTCAAGCTCTTGTTTTGTATTCCAAGCACAAAGGCAAAGGCAAAGGAGGACCACCTGAGAGAACAGTATCCAAATCAAGAACTGGTCTTTTAGAATCATGGAGTGAAGCAAGCTACAAGGCAGACTTCACAGTGGCACAGGATGGTTCAGGGACCCACAGAACAATCGGAGAAGCAGCAGATGCACTTGCTGCAAGGGGGCACAACCGTCCTGAAAGAGCAGTTATACATGTAAAATCAGGAGTGTACCATGAGAAGGTGGAGATTGGAAACAAGTTGCATAATGTGATGTTTGTTGGAGATGGCATAGACAAAACTATTATCACTGGTAATAGAAATGTCGTTCAGGGTTCTACCACTCTTAGCTCTGCCACATTTGATGGGCTGATTGATCCAAAAGGGTGGAGTGAATGGAGTGAAAACTTTGCAATCTCAACTTTGTACTATGGAGAGTATATGAACACAGGGAATGGTGCTTCTACACATAATAGGGTGAATTGGCCTGGTTTCCATGTGCTGAGTGATGCTAATGAAGCCTCACCCTTCACAGTGAGTCATTTTCTGCAAGGTGAAAGATGGATTCCAACTTCAGGGGCGCCTTTCTGGTCTGGAATTTAA 1026 0.4522 MGSCATALFLLLATIATTTTTFCLQEMEVLQMAQTQVSQAKNWVGNSVRLHGLEGSLSLSDQTSVALSDCAKLYEESESRLSHLVSHSDMSSYTKEDALTWVSAVMTNHMTCLDGLKEKGYVEAHHVLGGNLTMLLGQALVLYSKHKGKGKGGPPERTVSKSRTGLLESWSEASYKADFTVAQDGSGTHRTIGEAADALAARGHNRPERAVIHVKSGVYHEKVEIGNKLHNVMFVGDGIDKTIITGNRNVVQGSTTLSSATFDGLIDPKGWSEWSENFAISTLYYGEYMNTGNGASTHNRVNWPGFHVLSDANEASPFTVSHFLQGERWIPTSGAPFWSGI* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01223 341 Gene3D Invertase/pectin methylesterase inhibitor family protein 13 145 IPR035513 -
Rops4g01223 341 Pfam Pectinesterase 263 327 IPR000070 GO:0030599|GO:0042545
Rops4g01223 341 Pfam Pectinesterase 178 262 IPR000070 GO:0030599|GO:0042545
Rops4g01223 341 Pfam Plant invertase/pectin methylesterase inhibitor 31 124 IPR006501 GO:0004857
Rops4g01223 341 PANTHER PECTINESTERASE 263 331 - -
Rops4g01223 341 SUPERFAMILY Pectin lyase-like 261 340 IPR011050 -
Rops4g01223 341 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 123 IPR035513 -
Rops4g01223 341 Gene3D - 263 341 IPR012334 -
Rops4g01223 341 SUPERFAMILY Pectin lyase-like 175 262 IPR011050 -
Rops4g01223 341 Gene3D - 172 262 IPR012334 -
Rops4g01223 341 SMART PMEI_2 5 142 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01223 Rops-Chr4 32876426 32879861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01223 255 341 Carbohydrate Esterase AT3G60730 62.069 6.64e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01223 K01051 - gmx:100792852 360.147