Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01222 ATGGAAACTTTTCGTTTGCTCATAAGAATTCTATTTGTTCCCTTCTTGTTATCCTCTTTAGCTTCTGGTTATTCCTTGAATGAGGTTAAACTTTGGTGCGGCAAAACTCCCAACCCTCAACCTTGTGAGTATTTCTTGAGTAATAACCCAATTTACCAACACAATCTCATCAAACAACAAGATGATTTCTTCAAGCTTTCGTTGCAACTTGCTCAAGAGCGAGCACTCAAAGGCCATGCAAACACTCTTTCACTTGGTTCCAAATGCAATAACCCACGTGAAAGAGCTGCTTGGGCTGATTGCGTTGAGCTTTATGAGCAAACCATCCATAGGCTCAACAAAACCTTAGACCCAAACACCAAGTGCTCCCAAGTTGATACTCAAACATGGCTCAGCACAGCTCTCACTAACCTCGAGACATGCAAAGCTGGGTTCTACGAGCTTGGTGTTCAAGACTCTGTGCTGCCTCTCATGTCTAACAATGTCACCAAGTTGCTTAGCAACACCTTGGCACTTAACAAAGTTCAATACCAAGAACCAAGTTACAAAGATGGGTTCCCAACATGGGTCAAGCCAGGTGATAGGAAACTGTTGCAAACATCTCCATCTTCTCGAGCTAACGTTGTGGTGGCAAAAGATGAGTCTGGAAAATACACAACTGTGAGTGCAGCCATAAATGCTGCACCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGCTGGTGTATACAATGAACAAGTTGAGATAAAAGCAAACAATATCATGTTGGTGGGTGATGGTATTGGCAAGACCATAATCACCGGTAGCAAAAGTGTTGGAGGTGGCACCACAACCTTCCGTTCAGCCACTGTTGATTTGAAACCTGTTCAAAGCTCTGTTAAGACTTATCTTGGAAGACCTTGGCAACAATACTCAAGGACAGTTTTCATGAAGACTTATCTAGATGGTTTGATAAACCCAGCTGGTTGGTTGGAATGGGATGGTAACTTTGCATTGAACACTTTATACTATGGAGAGTACATGAACACAGGTCCAGGTTCTTCAACTACAAGTCGTGTTAAATGGCCAGGTTATCATGTCATTACCAGTGCTTCTGAGGCCTCAAAATTCACTGTTGCAAATTTCATTGCTGGCAACTCGTGGTTACCATCCACTCGTGTGCCTTTCACTTCTAGTTTATAA 1188 0.4259 METFRLLIRILFVPFLLSSLASGYSLNEVKLWCGKTPNPQPCEYFLSNNPIYQHNLIKQQDDFFKLSLQLAQERALKGHANTLSLGSKCNNPRERAAWADCVELYEQTIHRLNKTLDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVQDSVLPLMSNNVTKLLSNTLALNKVQYQEPSYKDGFPTWVKPGDRKLLQTSPSSRANVVVAKDESGKYTTVSAAINAAPKSSSGRYVIYVKAGVYNEQVEIKANNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVDLKPVQSSVKTYLGRPWQQYSRTVFMKTYLDGLINPAGWLEWDGNFALNTLYYGEYMNTGPGSSTTSRVKWPGYHVITSASEASKFTVANFIAGNSWLPSTRVPFTSSL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01222 395 Gene3D - 202 289 IPR012334 -
Rops4g01222 395 Gene3D - 290 395 IPR012334 -
Rops4g01222 395 SMART PMEI_2 24 172 IPR006501 GO:0004857
Rops4g01222 395 Pfam Pectinesterase 287 381 IPR000070 GO:0030599|GO:0042545
Rops4g01222 395 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Rops4g01222 395 FunFam Pectinesterase 24 175 - -
Rops4g01222 395 CDD PMEI-like_3 31 174 - -
Rops4g01222 395 SUPERFAMILY Pectin lyase-like 290 392 IPR011050 -
Rops4g01222 395 NCBIfam pectinesterase inhibitor domain 12 174 IPR006501 GO:0004857
Rops4g01222 395 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Rops4g01222 395 PANTHER PECTINESTERASE 16 287 - -
Rops4g01222 395 SUPERFAMILY Pectin lyase-like 203 287 IPR011050 -
Rops4g01222 395 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 175 IPR035513 -
Rops4g01222 395 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01222 Rops-Chr4 32863735 32865387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01222 283 395 Carbohydrate Esterase AT2G45220 70.796 2.50e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01222 K01051 - gmx:100783428 483.411