Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01221 ATGATAGCTTTTCGTTTGCTCATAACACTTTTTGTTCCCTCCCTTCTATCATCTTTAGTTTCCGGTTATTCCTTGAATGAGGTTAAACTTTGGTGCAGCAAAACTCCCAACCCTCAACCTTGTGAGTATTTCTTGAGCAATAACCCAATTTACCAACACAATCTCATCAAACAACAAGATGATTTCTTCAAGCTTTCGTTGCAACTTGCTCAAGAGCGAGCACTCAAAGGCCATGCAAACACTCTTTCACTTGGTTCCAAATGCAATAACCCACGTGAAAGAGCTGCTTGGGCTGATTGCGTTGAGCTTTATGAGCAAACCATCCATAGGCTCAACAAAACCTTAGACCCTAACACCAAGTGCTCCCAAGTTGATACTCAAACATGGCTCAGCACAGCTCTCACTAACCTCGAGACATGCAAAGCTGGGTTCTACGAGCTTGGTGTTCAAGACTCTGTGCTGCCTCTCATGTCTAACAATGTCACCAAGTTGCTTAGCAACACCTTGGCACTTAACAAAGTTCAATACCAAGAACCAAGTTACAAAGATGGGTTCCCAACATGGGTCAAGCCAGGTGATAGAAAACTGTTGCAGACATCTCCATCTTCTCGAGCAAACGTTGTGGTGGCAAAAGATGGGTCTGGAAAATACACAACGGTCAGTGCAGCCGTTAATGCTGCACCAAAGAGTAGTAGTGGAAGGTATGTGATATATGTGAAGGCTGGTGTATACAATGAACAAGTTGAGATAAAAGCAAAGAATATCATGTTAGTGGGAGATGGTATTGGAAAGACCATAATCACCGGTAGCAAAAGTGTTGGAGGTGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGCCTCAGATTTGAAACCTCTTCAGAACTCTGTTAAGACTTATCTTGGAAGGCCTTGGAAGCAATATTCTAGAACAGTTTTCATGAAGACTTCTCTTGATAGTTTGATAAACCCAGCAGGTTGGTTGGAATGGAGTGGTAACTTTGCCTTAAGTACTCTATATTATGGAGAGTACATGAACACAGGTCCTGGTTCTTCCACTAGAAATCGAGTTAAATGGCCAGGTTATCATGTCATTACCAGCGCTTCCGAAGCCTCAAAATTCACTGTTGCAAATTTCATTGCTGGAAACTCATGGTTACCTGCCACCAAAGTGCCTTTTACGTCTTCTCTTTAA 1194 0.4288 MIAFRLLITLFVPSLLSSLVSGYSLNEVKLWCSKTPNPQPCEYFLSNNPIYQHNLIKQQDDFFKLSLQLAQERALKGHANTLSLGSKCNNPRERAAWADCVELYEQTIHRLNKTLDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVQDSVLPLMSNNVTKLLSNTLALNKVQYQEPSYKDGFPTWVKPGDRKLLQTSPSSRANVVVAKDGSGKYTTVSAAVNAAPKSSSGRYVIYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAASDLKPLQNSVKTYLGRPWKQYSRTVFMKTSLDSLINPAGWLEWSGNFALSTLYYGEYMNTGPGSSTRNRVKWPGYHVITSASEASKFTVANFIAGNSWLPATKVPFTSSL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01221 397 NCBIfam pectinesterase inhibitor domain 6 173 IPR006501 GO:0004857
Rops4g01221 397 SUPERFAMILY Pectin lyase-like 202 394 IPR011050 -
Rops4g01221 397 PANTHER PECTINESTERASE 12 288 - -
Rops4g01221 397 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Rops4g01221 397 FunFam Pectinesterase 23 174 - -
Rops4g01221 397 CDD PMEI-like_3 30 173 - -
Rops4g01221 397 Pfam Pectinesterase 286 383 IPR000070 GO:0030599|GO:0042545
Rops4g01221 397 SMART PMEI_2 23 171 IPR006501 GO:0004857
Rops4g01221 397 Pfam Plant invertase/pectin methylesterase inhibitor 27 171 IPR006501 GO:0004857
Rops4g01221 397 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Rops4g01221 397 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Rops4g01221 397 Gene3D - 288 397 IPR012334 -
Rops4g01221 397 Gene3D - 201 287 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01221 Rops-Chr4 32850138 32851798 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01221 276 397 Carbohydrate Esterase AT2G45220 68.033 8.84e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01221 K01051 - gmx:100783428 483.796