Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01214 ATGTTTGAACAGGTTACTATCCATTTGGGAGCACATGATACCGCAAAGCTTGTTGGTCTTCTTGAGAACTTCATTAAGAAATACGTCCAGTGTTATGGTTGTGGAAATCCGGAAACTGAGATCCTAATTACTAAGAGTCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTGGTGCCTCTGAATCAAGCACATATGCACCTCTTCTATTGAGCAAGGATGCTGCCAAGACATGTTCAAACTATCGGTTATCTCCTGGAGAGAGCAGTCACTCGAGGTTTGAAGTGGTTATTAAGATGTACCCACAAGGAAGGATGTCACACCATCTCCGTGAGATGCGTATTGGTGAATATCATGCTATAAAAGGACCCAAGGGACGTTTCAAAGGGAACCCACCATGTCTTGCATCTGAATGGTTCAGCAGTGTTTATAGTGAATATTATGAGCCTTCATCTGAACCCATTCCTCAGGACGATGATGCAGACTCGTTACCGGTTGATATCAAGCATGCTTTCACAGGAGAGGGTATTACAAGTGGTTATGGGTTCAGATATCCTGGATTAAAGCCTGGTTCCCTCTTTGTTTTTCAAAATGGTGCAGGGAAGCTTGAAACGTCAGCTTTTCTGTTGACTCCAAGGTACCGAGTTTTTGTCAGGGCGATGACACCAGGGGTACCTCTATTTCTGTTAAACTATGTTGTCCAGCTGCATGGCATTTTTGAGGCCGCAAGTTTTGGAGGTTCTAACGTGGAAACTCCCTGCATGTTGGGTCTTTGGGCACCCACTTAA 786 0.444 MFEQVTIHLGAHDTAKLVGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGGASESSTYAPLLLSKDAAKTCSNYRLSPGESSHSRFEVVIKMYPQGRMSHHLREMRIGEYHAIKGPKGRFKGNPPCLASEWFSSVYSEYYEPSSEPIPQDDDADSLPVDIKHAFTGEGITSGYGFRYPGLKPGSLFVFQNGAGKLETSAFLLTPRYRVFVRAMTPGVPLFLLNYVVQLHGIFEAASFGGSNVETPCMLGLWAPT* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01214 261 Gene3D - 35 65 - -
Rops4g01214 261 Pfam Domain found in IF2B/IF5 7 57 IPR002735 GO:0003743|GO:0006413
Rops4g01214 261 SUPERFAMILY Riboflavin synthase domain-like 88 128 IPR017938 -
Rops4g01214 261 Gene3D - 3 34 - -
Rops4g01214 261 Pfam Oxidoreductase FAD-binding domain 79 128 IPR008333 -
Rops4g01214 261 PANTHER F-BOX PROTEIN FAMILY-LIKE 147 199 IPR040275 -
Rops4g01214 261 Pfam Development and cell death domain 203 251 IPR013989 -
Rops4g01214 261 ProSiteProfiles DCD domain profile. 186 261 IPR013989 -
Rops4g01214 261 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 28 59 IPR016190 GO:0003743|GO:0006413
Rops4g01214 261 SMART eIF2Bneu4 1 59 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01214 Rops-Chr4 32776768 32778202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01214 10 57 Eukaryotic Initiation Factors Gene Family AT1G36730 91.667 9.02e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01214 K03262 - aew:130752453 104.76