Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01209 ATGTCTAACAATGTCACCAAGTTGCTTAGCAACACCTTGGCACTTAACAAAGTTCAATACCAAGAACCAAGTTACAAAGATGGGTTCCCAACATGGGTCAAGCCAGGTGATAGAAAACTGTTGCAACCATCTTCTCCATCTTCTCGAGCTAACGTTGTGGTGGCAAAAGATGAGTCTGGAAAGTACACAAGTGTGAGTGCAGCCATAAATGCTGGACCAAAGAGTAGCAGTGGGAGGTATGTTATACACGTCAAAGCTGGTGTATACAATGAACAAGTTGAGATAAAGGCAAAGAATATCATGTTGGTGGGAGATGGTATTGGAAAGACTATAATCACCGGTAGCAAAAGTGTTGGAGGGGGCACCACAACCTTCCGTTCAGCCACTGTTGGTAAGTAA 399 0.4361 MSNNVTKLLSNTLALNKVQYQEPSYKDGFPTWVKPGDRKLLQPSSPSSRANVVVAKDESGKYTSVSAAINAGPKSSSGRYVIHVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVGK* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01209 132 Gene3D - 46 131 IPR012334 -
Rops4g01209 132 ProSitePatterns Pectinesterase signature 1. 76 95 IPR018040 -
Rops4g01209 132 SUPERFAMILY Pectin lyase-like 46 130 IPR011050 -
Rops4g01209 132 Pfam Pectinesterase 51 131 IPR000070 GO:0030599|GO:0042545
Rops4g01209 132 PANTHER PECTINESTERASE 2 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01209 Rops-Chr4 32657209 32657607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01209 1 131 Carbohydrate Esterase AT2G45220 66.667 1.61e-51 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01209 K01051 - gmx:100783428 226.098