Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01205 ATGACAACTTTTCGTTTGCTCGTAACACTTTTGATCCCCTTCCTGCTTTCCTCTTTAGCTTATGGCTATTCTTGGGATGATGTAAAGGTGTGGTGTGGCCAAACCCCAAACCCTCAACCATGTGAGTATTTCTTGAACAATAACCCCACTTACCAACACAAACCCATCAACCACAAAGATGACTTCCTCAAACTTTCATTGCAACTTGCTCAAGAGCGAGCACTCATAGGCCATGCAAACACTCTTTCACTTGGTTCCAAATGCAATAACCCACGTGAAAGAGCTGCTTGGGCTGATTGTGTTGAGCTTTATGAGCAAACCATCAATAGGCTCAACAAAACCTTAGACCCAAACACCAAGTGCTCCCAAGTTGATACTCAAACATGGCTCAGCACAGCTCTCACTAACCTCGAGACATGCAAAGCTGGGTTCTACGAGCTTGGGGTTCAAGACTCTGTGCTGCCTCTCATGTCCAACAATGTTACCAAGTTGCTTAGCAACACTTTGGCACTTAACAAAGTTCAATATCAAGAACCAAATTACAGAGATGGGTTCCCCAGATGGGTCAAACCAGGTGATAGAAAACTATTGCAAACATCTTCTCCATCTTCTCAGGCTAACGTAGTGGTGGCAAAAGATGGGTCTGGAACGTACACCACGGTCAGTGCAGCCGTAAATGCTGCACCAAAGAGTAGTAGTGGAAGGTATGTGATATATGTGAAGGCTGGTGTATACAATGAACAAGTTGAGATAAAAGCAAACAATATCATGTTGGTGGGTGATGGTATTGGCAAGACCATAATCACCGGTAGCAAAAGTGTTGGAGGTGGCACCACAACCTTCGGCTCAGCCACTGTTGATTTGATACCTGTTCAGAGCTCTGTTAAGACTTATCTTGGAAGACCTTGGCAACAATACTCAAGGACAGTTTTCATGAAGACTTATCTAGATGGTTTGATAAACCCAGCAGGTTGGTTGGAATGGGATGGTAACTTTGCATTGAACACTTTATACTATGGAGAGTACATGAACACGGGTCCAGGTTCTTCCACTACAAGTCGTGTTAACTGGCCAGGTTATCATATCATTACAAGTGCTTCTGAGGCCTCACAATTCACAGTTGCTAATTTCATTGCTGGCAACTCGTGGTTACCGGCCACTAGTGTTCCTTTCACTTCTGGTCTTTAA 1188 0.4402 MTTFRLLVTLLIPFLLSSLAYGYSWDDVKVWCGQTPNPQPCEYFLNNNPTYQHKPINHKDDFLKLSLQLAQERALIGHANTLSLGSKCNNPRERAAWADCVELYEQTINRLNKTLDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVQDSVLPLMSNNVTKLLSNTLALNKVQYQEPNYRDGFPRWVKPGDRKLLQTSSPSSQANVVVAKDGSGTYTTVSAAVNAAPKSSSGRYVIYVKAGVYNEQVEIKANNIMLVGDGIGKTIITGSKSVGGGTTTFGSATVDLIPVQSSVKTYLGRPWQQYSRTVFMKTYLDGLINPAGWLEWDGNFALNTLYYGEYMNTGPGSSTTSRVNWPGYHIITSASEASQFTVANFIAGNSWLPATSVPFTSGL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01205 395 Pfam Pectinesterase 207 286 IPR000070 GO:0030599|GO:0042545
Rops4g01205 395 Pfam Pectinesterase 287 381 IPR000070 GO:0030599|GO:0042545
Rops4g01205 395 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Rops4g01205 395 NCBIfam pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857
Rops4g01205 395 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 174 IPR035513 -
Rops4g01205 395 Gene3D - 289 395 IPR012334 -
Rops4g01205 395 Gene3D - 201 288 IPR012334 -
Rops4g01205 395 FunFam Pectinesterase 23 174 - -
Rops4g01205 395 CDD PMEI-like_3 31 173 - -
Rops4g01205 395 PANTHER PECTINESTERASE 15 287 - -
Rops4g01205 395 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Rops4g01205 395 SMART PMEI_2 23 171 IPR006501 GO:0004857
Rops4g01205 395 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Rops4g01205 395 SUPERFAMILY Pectin lyase-like 202 394 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01205 Rops-Chr4 32631341 32633004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01205 283 395 Carbohydrate Esterase AT2G45220 69.912 1.17e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01205 K01051 - gmx:100783428 490.73