Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01204 ATGCTCCTTACTATGGAGTCATTTCGTTTGCTAACAACCCTTCTAATTGTTCCCTTTCTATTTTCTTCTATTGTTTCCGGTTACTCATCTAGTGAAATCAAATCATGGTGTAGCCAAACCCCTAACCCTCAGCCATGTGAGTACTATTTAAGCAATAGTGGTTTCAACAAACCCATAAAAAACAAGTCAGATTTTCTCAAAATTTCCATCCAACTTGCCATGGAGAGAGCACAAAAGGGCCAACAAGACACACATACACTCGGCCCAAAGTGCAAGAACTCACATGAAAGAGTAGCTTGGGCTGATTGCCTTGAACTCTATGAGTACACTATCCAAAGGCTCAATGAAACCATGGACCCCAACATCAAGTGCTCCCAAACCGATGCTCAAACTTGGCTTAGCACGGCTCTCACAAACCTTGAGACTTGCAAAGATGGGTTCTATGACCTTGGTGTTCCAAATAATGTGTTACCCCTGTTGTCCAACAATAATGTCTCCAAGTTGCTATGCAACACCCTTTACCTTAACAAGGGTCCTTACCAAAAACAAACTTACAAAGATGGTTTCCCAACATGGGTCAAGCCAGGTGATAGAAAACTATTGCAAACATCTTCAGCAGCTTCAAATGCCAATGTGGTGGTGGCTAAAGATGGTTCTGGCAAGTACACAACATTGAAGGCAGCCATAGATGCTGCACCAAAGAGTGGTAGTGGAAGGTATGTGGTATATGTGAAGGCTGGTGTTTACAATGAACAAGTTGAGATAAAAGCAAAGAATATCATGTTGGTTGGTGATGGTATTGGAAAGACCATAATCACCGGTAGCCAAAGCGTTGGAGGGGGCACCACAACCTTCCGTTCAGCCACTGTCGCTGCCTCAGATCTGAACCCAAGCTCAGTCAAGGCATATCTTGGGAGGCCATGGCAAAAATACTCAAGAACAGTTTTCATGAAGACTTATATTGATAGTTTGATAAACCCAGATGGTTGGATGGAATGGAGTGGTAACTTTGCTTTGGATACTTTATACTATGCTGAATATGCAAACACAGGTCCAGGTTCCTCTACTGCTAAAAGGGTCACATGGAAAGGTTACCATGTTCTCACTAGTGCATCTCAGGCATCACCTTTCACTGTTGGGAACTTTATTGCAGGGAACTCATGGTTACCAAGCACTGGTGTCCCTTTCACTTCTGGGCTTTAA 1203 0.4314 MLLTMESFRLLTTLLIVPFLFSSIVSGYSSSEIKSWCSQTPNPQPCEYYLSNSGFNKPIKNKSDFLKISIQLAMERAQKGQQDTHTLGPKCKNSHERVAWADCLELYEYTIQRLNETMDPNIKCSQTDAQTWLSTALTNLETCKDGFYDLGVPNNVLPLLSNNNVSKLLCNTLYLNKGPYQKQTYKDGFPTWVKPGDRKLLQTSSAASNANVVVAKDGSGKYTTLKAAIDAAPKSGSGRYVVYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSQSVGGGTTTFRSATVAASDLNPSSVKAYLGRPWQKYSRTVFMKTYIDSLINPDGWMEWSGNFALDTLYYAEYANTGPGSSTAKRVTWKGYHVLTSASQASPFTVGNFIAGNSWLPSTGVPFTSGL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01204 400 Gene3D - 295 400 IPR012334 -
Rops4g01204 400 Gene3D - 205 294 IPR012334 -
Rops4g01204 400 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Rops4g01204 400 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 178 IPR035513 -
Rops4g01204 400 NCBIfam pectinesterase inhibitor domain 14 177 IPR006501 GO:0004857
Rops4g01204 400 CDD PMEI-like_3 35 177 - -
Rops4g01204 400 Pfam Pectinesterase 297 386 IPR000070 GO:0030599|GO:0042545
Rops4g01204 400 Pfam Pectinesterase 211 293 IPR000070 GO:0030599|GO:0042545
Rops4g01204 400 PANTHER PECTINESTERASE 20 293 - -
Rops4g01204 400 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857
Rops4g01204 400 SMART PMEI_2 28 175 IPR006501 GO:0004857
Rops4g01204 400 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 177 IPR035513 -
Rops4g01204 400 SUPERFAMILY Pectin lyase-like 205 399 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01204 Rops-Chr4 32592571 32596235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01204 281 400 Carbohydrate Esterase AT2G45220 66.393 1.02e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01204 K01051 - gmx:100782892 428.328