Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01199 ATGTCCGCCTCATCCACTTCCTTTTCACCGGACCAGCACCTCTCTCCCTCCGACCAGCTCTGTTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACAGTGAGATGTGGTCATTGCACCAACCTTTTCTCTGTCACCATGCGAGGGCTTCTTCTTCCTACTGCTAATCAGCTTCACCTTGGCCACTCCTTCACTCCTCAAAATCTTCTGGAGGAGATTCGAAATGCACCTTCAACAAATATGATGATGAATCAGCTTCCAAACCCAAATGATTTCGTCATGAACACCATGAGAGGAGGACCAGAAGAAACCCCTAAACCTCCACCAGCTAATAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGACGTGCTTATGAAAGATGGGTTTTTCTCACCAGCAAATGTAGGTGTCTCTCCCTACTAG 645 0.4744 MSASSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLFSVTMRGLLLPTANQLHLGHSFTPQNLLEEIRNAPSTNMMMNQLPNPNDFVMNTMRGGPEETPKPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLMKDGFFSPANVGVSPY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01199 214 Gene3D High mobility group box domain 115 196 IPR036910 -
Rops4g01199 214 FunFam Axial regulator YABBY 123 195 - -
Rops4g01199 214 MobiDBLite consensus disorder prediction 110 132 - -
Rops4g01199 214 PANTHER PROTEIN YABBY 6-RELATED 3 190 IPR006780 GO:0007275
Rops4g01199 214 CDD HMG-box_SF 132 168 - -
Rops4g01199 214 SUPERFAMILY HMG-box 121 172 IPR036910 -
Rops4g01199 214 Pfam YABBY protein 16 178 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01199 Rops-Chr4 32500479 32503244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01199 27 212 C2C2-YABBY Transcription Factor Family AT4G00180 63.636 9.91e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Rops4g01199 YABBY 9.4e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01199 K25796 - gmx:100781267 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01199 4 32500479 32503244 Rops4g01199 4 32500479 32503244 ECH