Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01192 ATGGGGCCAGAACTTGCGACTTCAGAGTTGGTTAAAAATGGGGAATTGGAACAAGGGTTTAGGTTTCTGGGGTACATGACTTGCCAAGGGGATATCACTGATGTCATTGCTTGCACTAGCTTGATTCGTGGGACCTGCAGGCCTGACGGTGCCAAAGCCACACCTAATCCCTGCGAAGGGGTAGAGAAGGAGACCATAAACCTGGGGCTATGGCAAGCTTGTGCGGGGCCGTTGGTCAACCTTCCTCCGGCTGGGACTCACGTTATTTACTTCCCTCAAGGCCATAAGGATTCTGTTTATGCATTGGCAGTGAATGAAGCCGGAACAATTCTTGTCTCTGTTGGCACAGAAAAGGTTGTACGTGTCTGGGACCCAAGATCAGGATCAAAGACTCTAAAACTTAGAGGGCATGCAGATGACATGCAAGAAAAAAGAGGGCTGGCACAAGGGCAGACTCGGGGAGTGATCTTCACGGCACTTGATGAAGTTGCATGGTTGTATAGTGTACATGGAAGCAACGTGGCATGCTGTCCGGTTGTGCATGCATTTGCTATTATGACATCCCAAAAGATCCCACATCCTGATGCCAAGAAGCCCGAAGACTGGGATGATGAGAAAGATGGTGAGTGGACACCACCTACCTTTGCCAACCCTAAGTACAAGGGCCCATGGAAAGCAAAGAAAGTTAAGAACCCATCTTCCTCACAAGACGAAATCTCCCTTTCCTCGCGTCAGATTCTGCTCCGTTCATCTTTATCTTCCCAGGTTAACAACTCCATGTCAGGATCCTACATTAATGCATCACCGCTCCAAGATGGGAAGATCTCGGCCCTTGTTCCCACCACTGGAGCCACCACTTCAAACCATGCTGTTCTCTCCACTTCAGCTCGGGCTGGTTCCGCTGCCACCGTGTCTTCCGCGTCTGTAGGAATCAGTGAAAACGAGACTGATGATTATGACTGTAAAAGTGATGATTATTTTCTTAAAGTGTGCTAA 996 0.489 MGPELATSELVKNGELEQGFRFLGYMTCQGDITDVIACTSLIRGTCRPDGAKATPNPCEGVEKETINLGLWQACAGPLVNLPPAGTHVIYFPQGHKDSVYALAVNEAGTILVSVGTEKVVRVWDPRSGSKTLKLRGHADDMQEKRGLAQGQTRGVIFTALDEVAWLYSVHGSNVACCPVVHAFAIMTSQKIPHPDAKKPEDWDDEKDGEWTPPTFANPKYKGPWKAKKVKNPSSSQDEISLSSRQILLRSSLSSQVNNSMSGSYINASPLQDGKISALVPTTGATTSNHAVLSTSARAGSAATVSSASVGISENETDDYDCKSDDYFLKVC* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01192 331 Gene3D Calreticulin/calnexin, P domain 184 241 IPR009033 GO:0005509|GO:0005515
Rops4g01192 331 SMART WD40_4 85 124 IPR001680 GO:0005515
Rops4g01192 331 MobiDBLite consensus disorder prediction 193 210 - -
Rops4g01192 331 SUPERFAMILY WD40 repeat-like 91 140 IPR036322 GO:0005515
Rops4g01192 331 Pfam Creatinase/Prolidase N-terminal domain 147 190 - -
Rops4g01192 331 Pfam Calreticulin family 188 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops4g01192 331 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 92 124 - -
Rops4g01192 331 SUPERFAMILY P-domain of calnexin/calreticulin 189 233 IPR009033 GO:0005509|GO:0005515
Rops4g01192 331 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515
Rops4g01192 331 MobiDBLite consensus disorder prediction 192 237 - -
Rops4g01192 331 Gene3D - 67 167 IPR015943 GO:0005515
Rops4g01192 331 PANTHER CALRETICULIN AND CALNEXIN 189 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01192 Rops-Chr4 32311981 32313140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01192 48 101 B3 DNA Binding Superfamily AT5G20730 57.407 9.30e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01192 K08057 K15361 aew:130778575 94.3597