Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01191 ATGGGGCCAGAACTTGCGGCTTCAGAGTTGGTTAAAAATGGGGAATTGGAACAAGGGTTTAGGTTTCTGGGGTACATGACTTGCCAAGGGGATATCACTGATGTCATTGCTTGCACTAGCTTGATTCGTGGGACCTGCAGGCCTGACGGTGCCAAAGCCACACCTAATCCCTGCGAAGGGGTAGAGAAGGAGACCATAAACCTGGGGCTATGGCAAGCTTGTGCGGGGCCGTTGGTCAACCTTCCTCCGGCTGGGACTCACGTTATTTACTTCCCTCAAGGCCATAAGGATTCTGTTTATGCATTGGCAGTGAATGAAGCCGGAACAATTCTTGTCTCTGTTGGCACAGAAAAGGTTGTACGTGTCTGGGACCCAAGATCAGGATCAAAGACTCTAAAACTTAGAGGGCATGCAGATGACATGCAAGAAAAAAGAGGGCTGGCACAAGGGCAGACTCGGGGAGTGATCTTCACGGCACTTGATGAAGTTGCATGGTTGTATAGTGTACATGGAAGCAACGTGGCATGCTGTCCGGTTATGCATGCATTTGCTATTATGACATCCCAAAAGATCCCACATCCTGATGCCAAGAAGCCCGAAGACTGGGATGATGAGAAAGATGGTGAGTGGACACCACCTACCTTTGCCAACCCTAAGTACAAGGGCCCATGGAAAGCAAAGAAAGTTAAGAACCCATCTTCCTCACAAGACGAAATCTCCCTTTCCTCGCGTCAGATTTTGCTCCGTTCATCTTTATCTTCCCAGGTTAACAACTCCATGTCAGGATCCTGCATTAATGCATCACCGCTCCAAGATGGGAAGATCTCGGCCCTTGTTCCCACCACTGGAGCCACCACTTCAAACCATGCTGTTCTCTCCACTTCAACTCGGGCTGGTTCCGCTGCCAACGTGTCTTCCGCGTCTGTAGGAATCAGTGAAAACGAGACTGATGATTATGACTGTGAAAGTGAGGAGGATGTTGAAGCATTGGTCAAGGAAGTTCCGACAGAGTCTGTTCCTTCTAGGTGTTCTTCAAAACGAAGCAAAGCAGCAGAAGTTCATATTTGGCTTCAATGCTCGATGAAGCCATTGAATACCTTAACAACTTCAGCTCCAAGTTCAGATGTTGTCAGATGGACTGAGTTTGTATCCCATGAGTGTTTGCTTCTCCCTTATGAACAAGCACTTACTGGGGAGGATTCTACTTCTGGGCTTCATTATGTTTGCTCAGCTCGCATGCTATGGGTTGGGGAACGTACCCGCCAACTTGATGGTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGGCGAGTGATAAGAAATAG 1341 0.4817 MGPELAASELVKNGELEQGFRFLGYMTCQGDITDVIACTSLIRGTCRPDGAKATPNPCEGVEKETINLGLWQACAGPLVNLPPAGTHVIYFPQGHKDSVYALAVNEAGTILVSVGTEKVVRVWDPRSGSKTLKLRGHADDMQEKRGLAQGQTRGVIFTALDEVAWLYSVHGSNVACCPVMHAFAIMTSQKIPHPDAKKPEDWDDEKDGEWTPPTFANPKYKGPWKAKKVKNPSSSQDEISLSSRQILLRSSLSSQVNNSMSGSCINASPLQDGKISALVPTTGATTSNHAVLSTSTRAGSAANVSSASVGISENETDDYDCESEEDVEALVKEVPTESVPSRCSSKRSKAAEVHIWLQCSMKPLNTLTTSAPSSDVVRWTEFVSHECLLLPYEQALTGEDSTSGLHYVCSARMLWVGERTRQLDGAHVEFLRGVANPLGIKASDKK* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01191 446 SMART WD40_4 85 124 IPR001680 GO:0005515
Rops4g01191 446 Gene3D Aldolase class I 287 445 IPR013785 -
Rops4g01191 446 Pfam Class-II DAHP synthetase family 349 444 IPR002480 GO:0003849|GO:0009073
Rops4g01191 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515
Rops4g01191 446 Pfam Calreticulin family 188 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops4g01191 446 MobiDBLite consensus disorder prediction 193 210 - -
Rops4g01191 446 SUPERFAMILY P-domain of calnexin/calreticulin 189 233 IPR009033 GO:0005509|GO:0005515
Rops4g01191 446 SUPERFAMILY Aldolase 373 444 - -
Rops4g01191 446 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 378 445 IPR002480 GO:0003849|GO:0009073
Rops4g01191 446 MobiDBLite consensus disorder prediction 192 240 - -
Rops4g01191 446 SUPERFAMILY WD40 repeat-like 91 140 IPR036322 GO:0005515
Rops4g01191 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 92 124 - -
Rops4g01191 446 Pfam Creatinase/Prolidase N-terminal domain 147 190 - -
Rops4g01191 446 Gene3D Calreticulin/calnexin, P domain 184 241 IPR009033 GO:0005509|GO:0005515
Rops4g01191 446 Gene3D - 67 167 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01191 Rops-Chr4 32294244 32295822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01191 48 101 B3 DNA Binding Superfamily AT5G20730 57.407 2.91e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01191 K01626 - nnu:104604561 122.479