Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01167 ATGATGGAGAAGCCCAAGTGCAAGGTTTGCTTGAGAAACTTCTCTAATGGAAGAGCTTTAGGGGGTCACATGAGGTCACACATGAGGAACCTACCGATTCCTCCGAAACCAAACGAGTCACCACCGACGATTCAACTCAGTTTCGAGGCCGAGTCAGCTTCATCTTCTTTTGAAGAAGAAAACAAGGGTCTTTCCTATGGCCTAAGAGAGAATCCAAAGAAAAGTTCCCGAATTTTGGATCCAGAATTCAAGTTGGTTGGCACTGTGGAGGCCAGTTCTGTGATCGTTCAAGACAGAGAGAGCGAAACCGAGTCATCAAAGAACCTGACTCGGAAACGACCCAGAACAACTCGGAAACTAATAAAAAGGAGTGAAAAGAACGAGTCTGCAAGTTCTGCCTCGGACACGACAACAGAAGAAGATGTCGCTTTCTGTCTCATGATGTTGTCTCGTGACAAGTGGAAGAGACAACAACATCACAAGTTAATGGAAGAAGAAGAAGAACAGTACGAGGATGAAGAAGAAGAACAAGAGGACGAGGACGAGGAAGAAGAAGAGAGTGATGATGTATTCGAGGAGCTGAAATCGGTTAAGGTGAATAAGAGGGTACGAGGAAGGTACAAATGTGACACGTGTAACAAGGTGTTTCGATCTTATCAAGCACTGGGTGGACATAGGGCGAGTCACAAGAAGATCAAGGTAGTAGAAGAACATGAATCTGAGCATGAGAATAATAATGTTGGAGATTCTGTTCCTTTGGTGGTTGAGAAGAAAATCCATGAATGCCCCGTTTGTTTCAGGGTCTTTGCTTCAGGTCAAGCTCTTGGTGGACACAAAAGAACCCATGTTATTGGGTCAGCACAAACAGCAACAACAACAATAATCACTGAGGTTAGAACTGTACCAAAGTTTGGTGATACTTTGATAGATCTCAACCTCCCTGCTCCTATGGATGATGAAGATGTTAGCCAAATTGAAGATTCTGCCGTTTCTGATGCAGAATTTGTCAAATCTCGTTAG 1020 0.4382 MMEKPKCKVCLRNFSNGRALGGHMRSHMRNLPIPPKPNESPPTIQLSFEAESASSSFEEENKGLSYGLRENPKKSSRILDPEFKLVGTVEASSVIVQDRESETESSKNLTRKRPRTTRKLIKRSEKNESASSASDTTTEEDVAFCLMMLSRDKWKRQQHHKLMEEEEEQYEDEEEEQEDEDEEEEESDDVFEELKSVKVNKRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVVEEHESEHENNNVGDSVPLVVEKKIHECPVCFRVFASGQALGGHKRTHVIGSAQTATTTIITEVRTVPKFGDTLIDLNLPAPMDDEDVSQIEDSAVSDAEFVKSR* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01167 339 MobiDBLite consensus disorder prediction 96 138 - -
Rops4g01167 339 Pfam C2H2-type zinc finger 6 29 - -
Rops4g01167 339 Pfam C2H2-type zinc finger 260 282 - -
Rops4g01167 339 Pfam C2H2-type zinc finger 206 231 - -
Rops4g01167 339 MobiDBLite consensus disorder prediction 42 61 - -
Rops4g01167 339 MobiDBLite consensus disorder prediction 159 192 - -
Rops4g01167 339 MobiDBLite consensus disorder prediction 34 79 - -
Rops4g01167 339 MobiDBLite consensus disorder prediction 63 79 - -
Rops4g01167 339 SUPERFAMILY beta-beta-alpha zinc fingers 206 282 IPR036236 -
Rops4g01167 339 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Rops4g01167 339 Gene3D Classic Zinc Finger 204 282 - -
Rops4g01167 339 MobiDBLite consensus disorder prediction 316 339 - -
Rops4g01167 339 MobiDBLite consensus disorder prediction 167 190 - -
Rops4g01167 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Rops4g01167 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 282 IPR013087 -
Rops4g01167 339 SMART c2h2final6 207 229 IPR013087 -
Rops4g01167 339 SMART c2h2final6 5 27 IPR013087 -
Rops4g01167 339 SMART c2h2final6 260 282 IPR013087 -
Rops4g01167 339 Coils Coil 156 187 - -
Rops4g01167 339 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 338 IPR044303 GO:0006355
Rops4g01167 339 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Rops4g01167 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
Rops4g01167 339 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01167 Rops-Chr4 31477683 31478962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01167 2 325 C2H2 Transcription Factor Family AT3G60580 45.376 1.23e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops4g01167 zf-C2H2_6 2.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01167 - - aprc:113850450 369.392