Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01166 ATGAGGGCACATGGAATAGGGGATGAAACTGGGCACATGGATGATGATGACCCTGCAAGTGATTGGGAAGATAGGCTTGGTGGCAATGTGCCACCAAGCAACAAACGCATGTATGCTCTTAGAACAAACCCTAATAGGCTAAAGAGCTGTAGGGTATGTGAGAATTGTGGCAAAGAGTTTTTGTCTTGGAAGTCTTTCCTTGAACATGGAAAATGCACCTCCGAGGATGCTGAGTCTCTGGTCTCTTCTCCGGGCTCCGACGCCGCCGATGACGGCATTGGTCGGAGAGGTTGTGGTTGGTCTAAAAGGAAAAGGTCATTGAGAACCAAAGTTGGTAGCTTCAATTACAATTGTCCTTCAAGTGAGGAAGAAGACCTAGCCAATTGTTTGATGATGTTATCCAATGCCATTGTTGACCCTCTTGTGGCTGAACCTGAAGAGTCATGTGCCTCAGCTAGCAAAGACGAAGAAAGAAGAAACCCCATGAACTTCATTGCACCATTGTCATACAAAGTCCCTGTTGATAACAACAACAACAACAACAACAAAGCCAAAGGGGTTGCCAAGGGGTTATTTGAATGCAAAGCATGCAAGAAAGTTTTCAACTCACACCAAGCATTGGGTGGACATAGAGCAAGTCACAAAAAGGTTAAGGGCTGTTTTGCTGCAAGATTAGACAACTTTGATGATAGTCTAGCTGAGGATGATGTCATAACACATGAAGAGTTCTTCCCTACAAAATCAAACACCACCCTTCAATTTGATCATGGCTCCAACAACCCCACATTGGCTTCTTCCTCCAAACGCAAATCAAAAGTGCATGAATGCTCCATTTGTCATAGGAGTTTCTCTTCAGGACAAGCATTGGGAGGACACAAAAGGTGCCATTGGATCACATCAAATACACCAGACACATCCACATTGGCAAGGTTTCAACAATTTCAAGACCATATTGATCAAATACCAAAGTTTGATACCTCTTCTGAGCCACTTGATCTCAAATTAGACCTCAACCTTCCTGCTCCAACCAATGACCTTTCTCGTAGGAATGTGTCCACAGAAATTTACTTGCAGCCATGGGTTGCAACCAAGGAAATCAAAGATGATAACAACAATAGTCAATGTCAGAGTCATCACAACCTTAACCATGTTGACAATGACAATGATGAGGACAAAAACAATAACCCCTGCAACCCTTTGATGCAAAATGTGGATAACGAAGCTGATAGTAAGATCAAGTTGGCAAAACTAAGTGAACTAAAGGACATCAACCTTGGTGGCAGTTCTTCACCATGGTTGCAGGTGGGAATCGGTTCAACAACTGATGTGGGGACTGATACATAG 1344 0.4338 MRAHGIGDETGHMDDDDPASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDAADDGIGRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASKDEERRNPMNFIAPLSYKVPVDNNNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNFDDSLAEDDVITHEEFFPTKSNTTLQFDHGSNNPTLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNTPDTSTLARFQQFQDHIDQIPKFDTSSEPLDLKLDLNLPAPTNDLSRRNVSTEIYLQPWVATKEIKDDNNNSQCQSHHNLNHVDNDNDEDKNNNPCNPLMQNVDNEADSKIKLAKLSELKDINLGGSSSPWLQVGIGSTTDVGTDT* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01166 447 Pfam C2H2-type zinc finger 273 298 - -
Rops4g01166 447 Pfam C2H2-type zinc finger 192 216 - -
Rops4g01166 447 MobiDBLite consensus disorder prediction 1 36 - -
Rops4g01166 447 SUPERFAMILY beta-beta-alpha zinc fingers 191 296 IPR036236 -
Rops4g01166 447 Gene3D Classic Zinc Finger 190 296 - -
Rops4g01166 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 219 IPR013087 -
Rops4g01166 447 MobiDBLite consensus disorder prediction 1 23 - -
Rops4g01166 447 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Rops4g01166 447 SMART c2h2final6 274 296 IPR013087 -
Rops4g01166 447 SMART c2h2final6 192 214 IPR013087 -
Rops4g01166 447 ProSitePatterns Zinc finger C2H2 type domain signature. 276 296 IPR013087 -
Rops4g01166 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 296 IPR013087 -
Rops4g01166 447 PANTHER OS02G0659100 PROTEIN 1 444 - -
Rops4g01166 447 MobiDBLite consensus disorder prediction 369 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01166 Rops-Chr4 31461297 31462640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01166 90 339 C2H2 Transcription Factor Family AT1G02040 36.078 1.93e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops4g01166 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01166 - - gmx:100793846 785.793