Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01165 ATGACTGTGGAAGACAAAAGCATTCGCGAGGTGAGAAAGAATCTGGATGCAATGCAAGAACTGCTTTATTCTCTGCTCTTAAACCCTTGCTATTGCATCAACCGCCAATTGTTTAATGTCTCCAAAATTCAAAACGAGGCTCAATGGCAAATAGCAGCAGCTACATGGTATGGAGCACCAAATGGTGGTGGATCGGATGGTGCTGCTTGTGGATACGTTGATAGTGTGGAGACACCTCCACTCTCTAAAATGGTATCTGCTGGGGGCCCTTCTCTTTTCAATAATGGAAGAGGATGTGGTGCTTGTTATGAGGTGAAATGCACAGAAAATGCTGCATGTTCCGGAAAGCCTGTAACACTGATGATAGTCGATGAATGCCCTGGCTGTGCCTTAAAATCAGTCCAATTCGATCTCAGTGGCACTGCCTTTGGTTCCATGGCAAGTCCAGACCAGGCAGATAATCTTCTCAACGCTGGAAAGCTTAATAATATTCAGTACAGAAGGGTTGCATGCTCCTTTGGAAAGTCCATAGCCTTCACCATTGATAGTGCAGCCAACCCATATTATTTTGCTATGGAAGTGGAATATGAAAATGGGGATGGTGACCTTGTAGACGTTGAGTTGAAGCAAGCTCATGGATCAGACACTTGGCTACCAATGCAACGTTCATGGGGTGCAAGATGGGCTTTGAACTCTGGTTATAAGTTGCAACCTCCAATCTCTATAAAGGTCACAGAGGCTAGCAATGGCAACAACAAGACCATTGTGGCTGATAATGTGATTCCACAGAACTGGCAACCTGGCCAAGTTTATCGATCTATCATTAATTTCTAG 834 0.4448 MTVEDKSIREVRKNLDAMQELLYSLLLNPCYCINRQLFNVSKIQNEAQWQIAAATWYGAPNGGGSDGAACGYVDSVETPPLSKMVSAGGPSLFNNGRGCGACYEVKCTENAACSGKPVTLMIVDECPGCALKSVQFDLSGTAFGSMASPDQADNLLNAGKLNNIQYRRVACSFGKSIAFTIDSAANPYYFAMEVEYENGDGDLVDVELKQAHGSDTWLPMQRSWGARWALNSGYKLQPPISIKVTEASNGNNKTIVADNVIPQNWQPGQVYRSIINF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01165 277 CDD DPBB_EXPB_N 49 171 - -
Rops4g01165 277 Pfam Lytic transglycolase 86 161 IPR009009 -
Rops4g01165 277 Pfam Expansin C-terminal domain 177 262 IPR007117 -
Rops4g01165 277 SUPERFAMILY PHL pollen allergen 175 273 IPR036749 -
Rops4g01165 277 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Rops4g01165 277 PRINTS Major pollen allergen Lol pI signature 107 117 IPR005795 GO:0005576|GO:0019953
Rops4g01165 277 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Rops4g01165 277 PRINTS Major pollen allergen Lol pI signature 87 98 IPR005795 GO:0005576|GO:0019953
Rops4g01165 277 PRINTS Major pollen allergen Lol pI signature 249 266 IPR005795 GO:0005576|GO:0019953
Rops4g01165 277 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Rops4g01165 277 Gene3D - 173 277 IPR036749 -
Rops4g01165 277 PANTHER EXPANSIN-B3 27 277 - -
Rops4g01165 277 SUPERFAMILY Barwin-like endoglucanases 47 173 IPR036908 -
Rops4g01165 277 Gene3D - 35 172 IPR036908 -
Rops4g01165 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 176 IPR007112 -
Rops4g01165 277 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Rops4g01165 277 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Rops4g01165 277 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Rops4g01165 277 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Rops4g01165 277 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Rops4g01165 277 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Rops4g01165 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 273 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01165 Rops-Chr4 31440530 31444902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01165 28 277 Expansin Gene Family AT1G65680 53.571 1.37e-94 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01165 - - gmx:100786475 400.208