Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01163 ATGAGCCAGTGTGTCCCTAGCTGGGATGTGTTGGACTATGAAGTTGAAGAACTCACGTGGGAAAATGGGGAACTTTCCATGCATGGCTTAAGACCGCCGCAAGCGCCGCCGAAGGCCCTCAACGCCGCCGTCACCGGAAACCCAACTACCTGGGACAAGCCTCCTGCAAGTGGCACCTTGGAATTTATAACCCACCAAGGTGTCAGCGGCGGTTATGGGAAAGAGTTGGTCACGGCGGGTGACACCGCCGCTAAAGCTGTGACGATGGACGCTTCAGTGCCATGCTCCGATCTTAATCAAAAGCGGAGCATGGAGCAGGTTTTTGAGTCGGGAAGGGTTGGCACGTGCGGGGAGGGTTTCCCAGCACGTGTAGCTTCTTGCGGTGGTTCGGTGGCGCGTGTGCCTAAGGCGCAAGAGCTGAGTGGGAGTGTGAGTGGCAGTGCCACGTGGCACGGGGATTTGGGTGTGGGTTTCGCTTCGGCCTCCATGGGTTCGCCGGAAAACACCAACAACGACGAACATGACTTAATTTGCCACCGTAGATCACAGAGTGAGACACGGGATGAGGATTACAAGACAAAAAGAATGGAGAGATCTTCCACTAAAAGAAACAGAGCTGCAGCTGTACATAACCAATCTGAAAGGAAAAGGAGAGATAGGATCAACCAAAGAATGAAGGCATTGCAAAAGCTGGTCCCAAATTCCAGTAAGACTGATAAAGCTTCAGTGCTGGATGAGGTGATCACATATCTCAAGCAATTGCAAACACAAGTGCAAATGATGAATTGGATGAAGATGTCCTCCATGATGATGCCAATTACCATGCAACAACAACTTCAAATGTCTATGATGGCTCAGATGGGAATGAGTATGGGTATGAATATGGATATGAACACCATGAATATTCCAAGCATCCCTCCTTTCCTTCATCCAACTCCCTTCATGCCTATGGCCTCATGGGATGCCTGTGGTGGCGATCGACTGCAAGGAGCACCAGTGAAGCCCGTGACCAAGGATGCTCCTCCAGTTTCTAGTTCCAAGAGCTGA 1047 0.5091 MSQCVPSWDVLDYEVEELTWENGELSMHGLRPPQAPPKALNAAVTGNPTTWDKPPASGTLEFITHQGVSGGYGKELVTAGDTAAKAVTMDASVPCSDLNQKRSMEQVFESGRVGTCGEGFPARVASCGGSVARVPKAQELSGSVSGSATWHGDLGVGFASASMGSPENTNNDEHDLICHRRSQSETRDEDYKTKRMERSSTKRNRAAAVHNQSERKRRDRINQRMKALQKLVPNSSKTDKASVLDEVITYLKQLQTQVQMMNWMKMSSMMMPITMQQQLQMSMMAQMGMSMGMNMDMNTMNIPSIPPFLHPTPFMPMASWDACGGDRLQGAPVKPVTKDAPPVSSSKS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01163 348 Gene3D - 200 266 IPR036638 GO:0046983
Rops4g01163 348 MobiDBLite consensus disorder prediction 326 348 - -
Rops4g01163 348 SMART finulus 211 260 IPR011598 GO:0046983
Rops4g01163 348 FunFam transcription factor UNE10 isoform X1 200 265 - -
Rops4g01163 348 CDD bHLH_AtPIF_like 205 271 IPR047265 -
Rops4g01163 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 266 IPR036638 GO:0046983
Rops4g01163 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Rops4g01163 348 MobiDBLite consensus disorder prediction 181 218 - -
Rops4g01163 348 Coils Coil 211 231 - -
Rops4g01163 348 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 16 313 IPR031066 -
Rops4g01163 348 Pfam Helix-loop-helix DNA-binding domain 209 255 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01163 Rops-Chr4 31374152 31379826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01163 1 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 45.238 1.26e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g01163 HLH 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01163 - - gmx:100798775 282.337