Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01162 ATGAAGCACGTGCAATTCATCCTATCCCTTTTTCTTGTTCTTTTTGGTCCAATCTTTGTGATCTCAGAAGACCAAGCTTTCAACGATGATGTCTTGGGGTTGATTGTGTTCAAGGCTGGTATAGAAGACCCAAAAGGTAAACTCTCTACGTGGAATGAAGATGATTACAGTCCTTGCAATTGGAATGGTGTAAAATGTGACCCTGAAACTAATAGGGTATCTACTCTAGTCCTTGACGGATTCTCTCTTTCTGGGCATATTGGTAGAGGACTTCTGAGATTGCAATTCCTTCAAATTTTGTCCCTTTCCAGGAATAACTTCACAGGGACCATAAACCCTGATCTTCTTAGCCTTTGGAATTTACAAGTAGTTGATTTAAGTGAGAACAACCTATCTGGGTCAATCCCAGATGGATTTTTCCACCAATGTTGGTCTCTAAGAGTACTGTCATTTGCAATGAACAACCTCACAGGTAAGATTCCTGATTCTTTGAGCTCCTGCTCCTCATTGGCAACTCTGAACTTTTCCTCTAATCAACTAAGTGGGGAATTACCATCTGGGATGTGGTTTTTGAGAGAACTACAGTCACTTGATCTGTCAAATAACTTGCTGGAAGGAGAGATTCCTGAAGGAATTCAGAATCTATATGATTTGAGGGAGTTAAGGCTAGAGAATAACCACTTCATTGGTAGGCTTCCAAGGGATATTGGAGGCTGCTTGCTTTTGAAGTTGATTGATTTCAGTGGAAATTTTCTCTTTGGGAAACTTCCTGAGTCAATACAAAGACTCACCTCATGCACATTCCTCAGTGTGCAGGGGAATTCATTCACAGGTGGCATTCCAAATTGGATTGGAGAATTGAAAAATCTAGAGATATTGGATCTTTCTACAAATAGATTTTCTGGTCAGATTCCAAAATCAATAGGAAATCTAGACTCCCTGAGTAGATTAAATCTGTCCAGGAATCAGATCACAGGAAACTTGCCAGAGTCTATGGTAAACTGCATTAAGCTTTTGACTCTTGACATCAGTCACAATCACTTGGCAGGCCTTCTTCCTTCATGGATATTTATGATGGGTTTACAAAGTGTCTCTCTTTCTGGGAGCAGCTTCAGTAAGAGCAATTATCCTTCACTTACTTCCATGCCTGTATCTTATCATGGCCTTCAGGTTTTGGACTTGTCATCAAATGCATTTTCTGGCAAAATTCCATCTGGTATTGGAGGTCTTAGTAGCTTGCAAGTCTTGAATTTGTCCACCAACAATATCTCTGGTTCTATTCCAGTGAGTATAAGAGAACTTAAATCTTTGTACATTCTTGACTTAAGTAACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGTGCAATTTCACTCAGTGAACTGAAGCTACAGAAGAACTTCTTAGGTGGGAGAATTCCAGCCCAAATTGAGAAGTGTTCATCCCTAAGATCTTTGAATCTTGCTCACAACAAGCTTATTGGTTCAATCCCTGCATCCATTGCAAACCTAACCAATCTTCAGTATGTGGATTTGTCATGGAATGAACTCTCTGGAAGCCTACCCATGGAGCTGGAAAATCTTACCCAGCTTTTCTCATTTAAGGTTTCCGATAACCACCTTCAAGGTGAGCTACCAGTGGGTGGCTTCTTCAATACCATCTCTCCCTCATCTGTCTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAACCACTCCTGCCCATCTGTCCATCCAAAACCTATTGTCCTAAACCCCAATTCTTCTTACTCCAATTCCAGAAATTCCTTACAAAATCATCATCATAAGATCATGCTCAGTATCTCTGTCCTTATTGCTATTGGTGCAGCTATTTTTATTGCCATTGGTGTGGTGGCTGTTACTGTCCTAAATATCCATGTTAAGTCTTCAATGTCACATTCTGCTGCTCCATTTGCATTCTCTGGTGGTGAGGACTATAGTTGTTCGCCCACAAATGATCCAAACTGTGGCAAGCTTGTGATGTTTTCTGGTGATGTTGACTTTGCCAATGGAGCTCACAATCTTAACAAAGACAATGAAATTGGTCGTGGTGGATTCGGAGTTGTTTATTGCACTGTCCTTGGAGATGGACATTCTGTTGCAATCAAGAAGCTTACAGTGTCCAGTTTGACCAAGTCCCAAGAAGACTTTGAGAGGGAAGTTAAAATGCTTGGGAAGATTAGGCACCAGAATCTTGTGGCACTTGAAGGTTATTACTGGACTTCATCCTTGCAGCTCCTTATTTATGAGTACCTAGCTAGAGGGAGTTTACACAAGCTTCTACATGATGCTAAATGCAAAATTGTTTTTTCTTGGAAGCAAAGGTTCAAGATTATTGAAGGAATGGCAAAAGGGTTGGCCTATTTGCACCAAATGAACATAATCCATTATAATCTAAAATCAACCAATGTTTTGATTGATTGTTCTGATGAGCCAAAAATAGGAGATTTTGGCTTGGTGAGGCTATTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAGTTTGCTTGCCGCACAGTTAAGATAACTGAGAAATGTGATATATATAGTTTTGGAATTCTTGTTCTGGAGGTGGTGACAGGTAAAAGACCTGTGGAATATATGGATGATGATGTGGTTGTTTTGTGTGACATGGTGAGGGGTGCATTAGAGGATGGCAAGGTGGAACAATGTGTTGATGAGAAGCTTATGGGTAATTTTGCTGCAGAGGAAGCAGTTCCTGTTATAAAATTGGGGTTAGTTTGTGCATCACAAGTACCATCAAATCGTCCAGATATGGCTGAGGTAATCAACATATTAGAGTTGATTCAATGCCCTTCAGAAGGACAAGGGGAATTATAA 2901 0.403 MKHVQFILSLFLVLFGPIFVISEDQAFNDDVLGLIVFKAGIEDPKGKLSTWNEDDYSPCNWNGVKCDPETNRVSTLVLDGFSLSGHIGRGLLRLQFLQILSLSRNNFTGTINPDLLSLWNLQVVDLSENNLSGSIPDGFFHQCWSLRVLSFAMNNLTGKIPDSLSSCSSLATLNFSSNQLSGELPSGMWFLRELQSLDLSNNLLEGEIPEGIQNLYDLRELRLENNHFIGRLPRDIGGCLLLKLIDFSGNFLFGKLPESIQRLTSCTFLSVQGNSFTGGIPNWIGELKNLEILDLSTNRFSGQIPKSIGNLDSLSRLNLSRNQITGNLPESMVNCIKLLTLDISHNHLAGLLPSWIFMMGLQSVSLSGSSFSKSNYPSLTSMPVSYHGLQVLDLSSNAFSGKIPSGIGGLSSLQVLNLSTNNISGSIPVSIRELKSLYILDLSNNKLNGSIPSEIEGAISLSELKLQKNFLGGRIPAQIEKCSSLRSLNLAHNKLIGSIPASIANLTNLQYVDLSWNELSGSLPMELENLTQLFSFKVSDNHLQGELPVGGFFNTISPSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSNSRNSLQNHHHKIMLSISVLIAIGAAIFIAIGVVAVTVLNIHVKSSMSHSAAPFAFSGGEDYSCSPTNDPNCGKLVMFSGDVDFANGAHNLNKDNEIGRGGFGVVYCTVLGDGHSVAIKKLTVSSLTKSQEDFEREVKMLGKIRHQNLVALEGYYWTSSLQLLIYEYLARGSLHKLLHDAKCKIVFSWKQRFKIIEGMAKGLAYLHQMNIIHYNLKSTNVLIDCSDEPKIGDFGLVRLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYSFGILVLEVVTGKRPVEYMDDDVVVLCDMVRGALEDGKVEQCVDEKLMGNFAAEEAVPVIKLGLVCASQVPSNRPDMAEVINILELIQCPSEGQGEL* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01162 966 Gene3D Transferase(Phosphotransferase) domain 1 761 963 - -
Rops4g01162 966 CDD STKc_IRAK 690 956 - -
Rops4g01162 966 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Rops4g01162 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 679 760 - -
Rops4g01162 966 PRINTS Leucine-rich repeat signature 434 447 - -
Rops4g01162 966 PRINTS Leucine-rich repeat signature 338 351 - -
Rops4g01162 966 Pfam Protein kinase domain 685 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01162 966 SMART LRR_sd22_2 287 313 - -
Rops4g01162 966 SMART LRR_sd22_2 191 214 - -
Rops4g01162 966 SMART LRR_sd22_2 506 532 - -
Rops4g01162 966 SMART LRR_sd22_2 434 457 - -
Rops4g01162 966 ProSiteProfiles Protein kinase domain profile. 684 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01162 966 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Rops4g01162 966 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515
Rops4g01162 966 Pfam Leucine Rich Repeat 218 239 IPR001611 GO:0005515
Rops4g01162 966 SMART LRR_typ_2 191 214 IPR003591 -
Rops4g01162 966 SMART LRR_typ_2 311 335 IPR003591 -
Rops4g01162 966 SMART LRR_typ_2 287 310 IPR003591 -
Rops4g01162 966 SMART LRR_typ_2 118 142 IPR003591 -
Rops4g01162 966 SMART LRR_typ_2 506 529 IPR003591 -
Rops4g01162 966 SMART LRR_typ_2 530 554 IPR003591 -
Rops4g01162 966 SMART LRR_typ_2 410 433 IPR003591 -
Rops4g01162 966 SMART LRR_typ_2 215 239 IPR003591 -
Rops4g01162 966 SMART LRR_typ_2 434 458 IPR003591 -
Rops4g01162 966 SUPERFAMILY RNI-like 304 548 - -
Rops4g01162 966 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515
Rops4g01162 966 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Rops4g01162 966 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Rops4g01162 966 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515
Rops4g01162 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 761 962 - -
Rops4g01162 966 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 191 954 - -
Rops4g01162 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 307 580 - -
Rops4g01162 966 SUPERFAMILY L domain-like 44 375 - -
Rops4g01162 966 Gene3D Ribonuclease Inhibitor 189 241 IPR032675 -
Rops4g01162 966 Gene3D Ribonuclease Inhibitor 242 308 IPR032675 -
Rops4g01162 966 Gene3D Phosphorylase Kinase; domain 1 661 760 - -
Rops4g01162 966 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Rops4g01162 966 SUPERFAMILY Protein kinase-like (PK-like) 680 957 IPR011009 -
Rops4g01162 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 28 306 - -
Rops4g01162 966 Gene3D Ribonuclease Inhibitor 309 582 IPR032675 -
Rops4g01162 966 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01162 Rops-Chr4 31364789 31367848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01162 20 966 Receptor kinase-like Gene Family AT3G56370 62.264 0.0 1128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Rops4g01162 Pkinase 5.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01162 - - gmx:100791204 1572.76