Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01155 ATGGCAGCGTCTCTGGTAGGAGGAGCTGCTGTGGGAGCTGTATTTGGAGAATTGCTTAAGGTCGTTTTGGAAATAAGAGGTAAGGCCATTATTTTCAAACAAACCTTGGCCTCCCTCCGATCCACTTTAGTAGCAATAACTCCAACAATCAAAGAGATAGAGCAACACTACAATGACTTGGGCCGTCCAAAAGAGGAACTTGAATGGCTGATCAAAGAAATGGAGAAGGGAACAGAGCTTGTGCGCAGGTGTTCAAAAATCCACAGGCTAAATTATGTAGCCAGGGTTCGTTACCAGTATCAACTAGAGGAATTTATTGACTCACTTGTGAGGTTTTTCACCATTAATATGCAAGCTCACACTTCAAGAGATCAAAAGGAGACCCTGCTTAAGGTTAATAGAATACATCGCTGGGTTAATAAACTCCCTTTGGTCAACCCAGAAGATACAGCTGGTTCATCTTCTGATTCTATCACTGTGAGTGAATCAGATATCTATGTTGAAAATGCAGTGGAAACTAATTGTACTGAGGAGGCCATGGAAAGTATCAGCCAACTAACAAGAAATTCGATTCCTCTTTCCCCAACCCAGACAGCAGAAAATGCAGTCGGGACTAATTCTGCTGAGCAAGCCTTGGTGCCTCTGACCAGCATCGCTCATGAGCTCAAATCTTTTAGTCCTGAAGACCAAAGATTAGCTGCAGGCGAGATTCGTCTTCTTTCAAGGCGCAGTGCAGATAACCGTGTAGCTATTGGTGAAGCTGGTGCAATACCTCTCCTTGTTAGTCTCCTGTCAGTGCTTGATTCCCGCACTCAAGAGCATCCTGTGACAGCACTTCTGAATCTTTCCCTATATGAAAATAACAAAGGAATTCTTGTGTTGTCAGGAGCAATTTCAAGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGCCTTTCAATTATAGATGAAAATAAGTTTATAATTGGTTCTTCAGGAGCCATACCACCTCTACTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGTTGCTGCAATAGCACTCTTCGATTTATGCATTTACAAGGATAACAGGGGAATGGCAGTGAGCGCTGGTGTTATTCCCACACTAATGCGACTGTTGACAGAACCTAGTTGGGGAATGGTGGATGAAGCATTGATAATTTTGGCAATATTGTCTTGTCATCCTGAAGGGAAGATTGTGATTGGTGCTGAGAAGGAGGCAGTGCAGGTTTTGGTAGACTTTATTTGCAATGGATCACAGAGGAATAAAGAGGACGCAGCTGGAGTTTTAGTTAACCTTTGTTCTGGAGATCAACAATATCTAGCACAGGCACAAGAGCTAGCAGTGATGGGTCCATTGTTGGAATTGGCTCAAAATGGTACAGATAGAGGCAAAAGAAAGGCAGCACAATTGATAGAGCGTATGGACATGGTCCTTTAG 1482 0.4345 MAASLVGGAAVGAVFGELLKVVLEIRGKAIIFKQTLASLRSTLVAITPTIKEIEQHYNDLGRPKEELEWLIKEMEKGTELVRRCSKIHRLNYVARVRYQYQLEEFIDSLVRFFTINMQAHTSRDQKETLLKVNRIHRWVNKLPLVNPEDTAGSSSDSITVSESDIYVENAVETNCTEEAMESISQLTRNSIPLSPTQTAENAVGTNSAEQALVPLTSIAHELKSFSPEDQRLAAGEIRLLSRRSADNRVAIGEAGAIPLLVSLLSVLDSRTQEHPVTALLNLSLYENNKGILVLSGAISSIVHVLKKGSMEARENAAATLFSLSIIDENKFIIGSSGAIPPLLTLLSEGTQRGKKVAAIALFDLCIYKDNRGMAVSAGVIPTLMRLLTEPSWGMVDEALIILAILSCHPEGKIVIGAEKEAVQVLVDFICNGSQRNKEDAAGVLVNLCSGDQQYLAQAQELAVMGPLLELAQNGTDRGKRKAAQLIERMDMVL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01155 493 PANTHER U BOX DOMAIN-CONTAINING 186 488 - -
Rops4g01155 493 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 3 134 IPR008808 -
Rops4g01155 493 Gene3D - 194 355 IPR011989 -
Rops4g01155 493 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 297 IPR000225 GO:0005515
Rops4g01155 493 ProSiteProfiles RPW8 domain profile. 1 151 IPR008808 -
Rops4g01155 493 Pfam Armadillo/beta-catenin-like repeat 245 283 IPR000225 GO:0005515
Rops4g01155 493 FunFam RING-type E3 ubiquitin transferase 198 492 - -
Rops4g01155 493 SUPERFAMILY ARM repeat 222 489 IPR016024 -
Rops4g01155 493 SMART arm_5 326 366 IPR000225 GO:0005515
Rops4g01155 493 SMART arm_5 408 449 IPR000225 GO:0005515
Rops4g01155 493 SMART arm_5 244 284 IPR000225 GO:0005515
Rops4g01155 493 SMART arm_5 285 325 IPR000225 GO:0005515
Rops4g01155 493 SMART arm_5 367 407 IPR000225 GO:0005515
Rops4g01155 493 Gene3D - 363 491 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01155 Rops-Chr4 31228488 31231094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01155 226 489 U-box Gene Family AT3G46510 73.485 3.26e-128 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01155 - - gmx:100815575 411.379