Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01154 ATGGAGTCAAGGAGTTGCATGAACGTGGCGTGTGCCACCTCAACGTCGATTCGGTGGCGCAAAGGTTGGGCCTTGCGATCCGGTGAATTCGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGCAATCAACGTATTGTGATATGTTCCACTCGAACGATTCTGGTTGGAGAGAGTGCACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCTAGCTCTCAGCTTGAATTACTCGACACTGGTGGTGTAAGCTGTATAAACTGTGCAAGTAAATCAGGACTTCAACCTATTGCAAGTAATGAAAAGCCTAATGGATCTGGGACATCAAAGATAAATAATGTCACTGCACAGCAGTGCACATCTCTGGCAAACCAATTAAATGTGAGGGGAATGCAAGTCGGGCATTATGCAGAGAATGATGGGCTGAGGTGCTGGCTCAAACCTCATAATGTTGATACAGATGGGCCTTCTACAGAAATGAAACCAGAAGTTTTGCCTTCTATTGGAGAACTTGGAAATACTTTGATATCACAATTTCATCGTGAATCTAACGGATCATCTAAGACTACCAAAGCAGAGAACTGCAAGGCGGACACAGACATGCAAGATATATATGAATCATTGTCACAGACAAATTTAAGTATGACCCTTGCTGCTCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCACCTCCACTCTTATTGGGGTCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCCAACTCTGGTCCCAGGCTTTGAAGCAAATGCAGGCATGGTGTCCCAGATTCGTATAGCAAGGCCTCCTGCTGAAGGACGGGGAAGGAATCAGTTGCTTCCACGTTATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATTTCGGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGTTTGGTTCTACCAAAAGCATGTGCTGAGGCATATTTCCCTCCTATCTCTCAACCCGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACTCCATGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGTCGTATGGACCCTGAGGGGAAACTCATAATGGGGTTCAGGAAGGCAACAAATTCCGCTGCAGTACAGGAAACTCTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGCACTGTCTAAAAAATGGAACTCAGCTGGTGGTGACATGAATTGGCAAAATATTGACATGCCTGAAAGCAGGAAAAGAGATGGGTTGCCTTTGCCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGACAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTCCGTCCACCTCCAACAGTTAAGCCAAGTGTTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTCGGAAAGAGGAGTATATTTGTAGTACGATCAACTGGGATAAATGAGCAGTGGACACAGTGTGATAGTTGCTCAAAATGGCGGAAGTTACCAGTTGATGTACTTATTCCCCCTAAATGGACGTGTATTGAGAATTTATGGGATCAGAGCAGGTGTTCATGTTCTGCTCCCAATGAATTGAACCCTAGGGAACTGGATAATCTTCTGAGACTGAACAAGGAATTCAAGAAACAAAGACTAGCAGCAAGCCACAGACCAGCCCTGGAACACGAATCTTCTGGACTGGATGCTTTGGCAAATGCTGCAATACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTTACCACTACAAAACACCCCCGGCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGCCAATCTGAACGTGAAGCAGAAATTGCTCAGAGAAATCAGCTATCGTGGAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACTTTTAACTCCAGTTGATGGTTTGGAGAATGAAGCAAGGGTGCCAAATGAGTTAGATTCAAGGAGTCAAGACCATGTTACTGAAGCTGCCAAGGGACAATTAGACTTGAATTCCCAACCTGATCGGGAAGACGTGCAAGCCGGGCCAAACACTGTGAGCATGATTAGTCTTCTTGAAGAAGCAAATCTCCCACTGGAGACATACCTGAAGCAAAATGGCCTCACTAGCTTGATACAAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACTAATGAGAGTGAGGGAAGAAACAATGAGGATTGCTATACTCCTTCTGCAGTTCATGAGCAAGAAAGCAGTCCTGAAGAGAACAGCGGGCAAGACAAAGACCAAAACAATTCACTCTCATGA 2724 0.4438 MESRSCMNVACATSTSIRWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHSNDSGWRECTSCGKRLHCGCVASSSQLELLDTGGVSCINCASKSGLQPIASNEKPNGSGTSKINNVTAQQCTSLANQLNVRGMQVGHYAENDGLRCWLKPHNVDTDGPSTEMKPEVLPSIGELGNTLISQFHRESNGSSKTTKAENCKADTDMQDIYESLSQTNLSMTLAAPLGNSNPFHSAVVDEREQSKTSPPLLLGSRSRHLLPKPPRPTLVPGFEANAGMVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSAAVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSAGGDMNWQNIDMPESRKRDGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSVVMIEDHVFEEYEEPPVFGKRSIFVVRSTGINEQWTQCDSCSKWRKLPVDVLIPPKWTCIENLWDQSRCSCSAPNELNPRELDNLLRLNKEFKKQRLAASHRPALEHESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTSRLLTPVDGLENEARVPNELDSRSQDHVTEAAKGQLDLNSQPDREDVQAGPNTVSMISLLEEANLPLETYLKQNGLTSLIQEQQTNSASNVQAQTTNESEGRNNEDCYTPSAVHEQESSPEENSGQDKDQNNSLS* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01154 907 MobiDBLite consensus disorder prediction 779 821 - -
Rops4g01154 907 Gene3D - 590 646 - -
Rops4g01154 907 Gene3D - 300 427 IPR015300 -
Rops4g01154 907 SMART B3_2 322 422 IPR003340 GO:0003677
Rops4g01154 907 MobiDBLite consensus disorder prediction 786 802 - -
Rops4g01154 907 MobiDBLite consensus disorder prediction 855 907 - -
Rops4g01154 907 Pfam B3 DNA binding domain 322 421 IPR003340 GO:0003677
Rops4g01154 907 Pfam CW-type Zinc Finger 592 634 IPR011124 GO:0008270
Rops4g01154 907 FunFam B3 domain-containing transcription repressor VAL1 300 427 - -
Rops4g01154 907 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 859 - -
Rops4g01154 907 CDD B3_DNA 320 421 IPR003340 GO:0003677
Rops4g01154 907 MobiDBLite consensus disorder prediction 235 261 - -
Rops4g01154 907 SUPERFAMILY DNA-binding pseudobarrel domain 319 421 IPR015300 -
Rops4g01154 907 ProSiteProfiles B3 DNA-binding domain profile. 322 423 IPR003340 GO:0003677
Rops4g01154 907 ProSiteProfiles Zinc finger CW-type profile. 587 637 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01154 Rops-Chr4 31212526 31220316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01154 1 858 B3 DNA Binding Superfamily AT4G32010 50.926 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops4g01154 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01154 K09287 - gmx:100778833 1697.56