Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01151 ATGCACACACCAAAAGGAATGCAAGTTGTGCCATTTTTGCTCTTTCTACTAATTTGGAATGCTAATGACACCTATGGTGACCAACAAGAGAGTGGGTGGCAGAGTGCACATGCCACATTTTATGGTAGCAGTGATGCTTCTGGCACTATGGGTAACTTAACCCGCACTTTGTATAGCTATGTTCCTTTGATGGTGCCATGTATGAAGAAAGGAGGGATAAGGTTCACCATAAATGGGCATTCATACTACAATTTGGTGTTGATAACAAATGTGGGAGGGGCAGGAGATGTAAAAGCAGTGTCAATAAAAGGGTCAGGAACTGGGTGGCAACCAATGACAAGAAACTGGGGTCAGAATTGGCAGAGTAACTCATATCTCAATGGGCAGAGCCAGTCCTTTATGGTCACAACTAGTGATGGTAGAACAGTAATAAGTTACAATGTGGTTCCTGCAGGTTGGCAATTTGGACAAACCTTTGAAGGTGGTCAATTTTAA 495 0.4283 MHTPKGMQVVPFLLFLLIWNANDTYGDQQESGWQSAHATFYGSSDASGTMGNLTRTLYSYVPLMVPCMKKGGIRFTINGHSYYNLVLITNVGGAGDVKAVSIKGSGTGWQPMTRNWGQNWQSNSYLNGQSQSFMVTTSDGRTVISYNVVPAGWQFGQTFEGGQF* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01151 164 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 82 161 IPR007117 -
Rops4g01151 164 Pfam Expansin C-terminal domain 73 150 IPR007117 -
Rops4g01151 164 Gene3D - 71 164 IPR036749 -
Rops4g01151 164 PRINTS Expansin signature 71 83 IPR002963 GO:0009664
Rops4g01151 164 PRINTS Expansin signature 147 163 IPR002963 GO:0009664
Rops4g01151 164 PRINTS Expansin signature 83 104 IPR002963 GO:0009664
Rops4g01151 164 PRINTS Expansin signature 118 139 IPR002963 GO:0009664
Rops4g01151 164 PANTHER EXPANSIN-A15 16 51 IPR002963 GO:0009664
Rops4g01151 164 FunFam Expansin 72 164 - -
Rops4g01151 164 SUPERFAMILY PHL pollen allergen 69 161 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01151 Rops-Chr4 31043748 31045193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01151 65 164 Expansin Gene Family AT1G26770 78.000 1.10e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01151 - K20628 jre:109002421 173.711