Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01143 ATGGGGAATTACAGGTTTAAGTTATCAGATATGATTCCCAATGCTTGGCTTTACAAGCTGAGGGACATTGGAAGAGGAAAGAATCAAACAACCACTCCCTCCTCAAGAAACAAAAAGCAATCTTCATCAGCCTCAACCACACAACCATCAAAACCAAAACAACCCCACCAATGCAATCCCAGAAAATCATACTACTTCACAAGAGAGCTTAACCCAACAAATTCCAGATTCTACACTTCACCAACAAACAACCCAAAAATCTCACCACACACCAACAATTCCCCTAAACCATCATCCAAACAAAGAACAAGGAGAAGAAGAAGAGCAACAACCACAAGGACTTCTTCTTCTCCAAAATTTGTCAGCTCCTCAACAGTCTCTGCAGGTTGTAGCTGCCGCACCACACTTGAATCTGTTTGGACTAAATCAGATTCCCCACATGAAAACTCCTCATCTCCATTTGATAGCACACCCGAGTCAGAATTCCCTGACCCGGAATTCAGAACAGACCGAGTTCTTCCCACTGAGTCATCATTTGATGAAATGGTTTCACTTTCCACCTCTTGTTCTTGCAGGCAAAGCTCCAACACCACCAAAGATATCGTTATCGATGTGGACAAGAATTCTCTAGAAAGAAAAGATGATAAGCTTGAAGGGTATGACACTTTCTCAGAGGTGGAACTTCCTCCAATCATAACCAAACCACCCAAATTCAATGACTTTGTGAGTGATGCAAAGAAGAAAGAAACCAAACCCAGAAGCAGAATTGCTACACTTGAAGAAGAAGAAGAAGAGTCTCTCAAAGTTAAAATTTTGAAGGAAGTCACAACATCAATGAAAGAACAAAAACAGAGGAGTGTTGGTGGCACTGTTAGGAGATTCTCTTCTCACTCAGTGAGTTCTCCGGGTTTGAAGCTCCGAGTCAACTCACCGAGAATCGTTGGCCGGAAGGTCCATTCTCATGGCCGGAAAAGTGTGTCATCAACGGCAAGCTCTGGTTCCCGGAGAAGCCTCTCAGATAGCTTTGCCATTGTGAAGTCATCATTCAACCCACAAAAGGATTTCAGAGAGTCAATGGTGGAGATGATTGTGGAGAATAACATAAGGGCCTCTAAGGATTTGGAAGATCTTCTTGCTTGTTATCTTTCTCTGAATTCAGATGAGTATCATGATCTCATCATCAAGGTGTTCAAGCAAATATGGTTTGATTTGACTGAAATAAGGTAG 1227 0.4222 MGNYRFKLSDMIPNAWLYKLRDIGRGKNQTTTPSSRNKKQSSSASTTQPSKPKQPHQCNPRKSYYFTRELNPTNSRFYTSPTNNPKISPHTNNSPKPSSKQRTRRRRRATTTRTSSSPKFVSSSTVSAGCSCRTTLESVWTKSDSPHENSSSPFDSTPESEFPDPEFRTDRVLPTESSFDEMVSLSTSCSCRQSSNTTKDIVIDVDKNSLERKDDKLEGYDTFSEVELPPIITKPPKFNDFVSDAKKKETKPRSRIATLEEEEEESLKVKILKEVTTSMKEQKQRSVGGTVRRFSSHSVSSPGLKLRVNSPRIVGRKVHSHGRKSVSSTASSGSRRSLSDSFAIVKSSFNPQKDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTEIR* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01143 408 ProSiteProfiles OVATE domain profile. 344 403 IPR006458 -
Rops4g01143 408 MobiDBLite consensus disorder prediction 141 169 - -
Rops4g01143 408 MobiDBLite consensus disorder prediction 141 158 - -
Rops4g01143 408 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 60 404 IPR038933 GO:0045892
Rops4g01143 408 Pfam Transcriptional repressor, ovate 348 404 IPR006458 -
Rops4g01143 408 MobiDBLite consensus disorder prediction 281 303 - -
Rops4g01143 408 MobiDBLite consensus disorder prediction 25 98 - -
Rops4g01143 408 NCBIfam uncharacterized plant-specific domain TIGR01568 343 405 IPR006458 -
Rops4g01143 408 MobiDBLite consensus disorder prediction 25 125 - -
Rops4g01143 408 MobiDBLite consensus disorder prediction 316 335 - -
Rops4g01143 408 Pfam DNA-binding domain 1 42 IPR025830 GO:0003677
Rops4g01143 408 MobiDBLite consensus disorder prediction 280 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01143 Rops-Chr4 30861660 30863195 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Rops4g01143 Ovate 3.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01143 - - aprc:113850281 447.588