Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01141 ATGGCGATTTCACCTCAAACGTTCCCAACCAGAAAACGACGATCCTCAGAGGGGTCGTTTATCTCTCCGAAGATCACCGAGTTTAATCTTCTTCATTCTCTGGTGCATCTCACCCATCAAATATGTTCTCTCAACACAACCACCAACCACTTCGTTCTGAGTCGCAGTTCCTCTTCCACCATCCGCAAAACGCAGCTCCTTGGTGTCGTTTTCGAAGATCTGCTTCGCGTTTCGAATTCAACTTCCTTTACTCCTCTATGCTCACACTCACTTGTTCTTTGTCTCGAGGAAATGTACATCGTGCTGCACAGGATCAAAACCCTAATCGAAGATTGCTCCAACGGAAGCAAATTCTCCATCCTAATGCAAATTGAAACCGTCGCTGATAATTTTCACAAGCTCACCGGAGAATTATCCACGCTTCTCGATATCTTCCCTCTTCAAGAGCTTGACCTAAACGACGACGTTCGGGAACTTGTTCTTCTTATTAGAAAACAGTGCTCTGAATCGAAGCCAATCCTCGGGGAAGAACAATTGAATCTCCGAAACGAGGTCGTTTCGCTTTTGGACGGGATCAAAAGAGAGATAGTTCCTGATCAATCACAATTGGCTTCGATTTTCGAGAAATTGGAGATTCGAGATTCTTCAAGTTGCAGAGCAGAGATTGAGAATTTACAAGAAGAGATTCAGAATCGGAGCGAAGAACAATCAAAATCAGAGATCGGGGCTTTAATTGGCCTCGTTCGTTTCGCAAAGTGTGTTCTCTTCGGTACGTCAACACCATCGCCGGGAAGTGGGAGCCTGCGGCGGATACAATCGTCGGAGTTGGCGGTTCCGGCAGATTACCGTTGTCCGATAAGCTTAGAACTTATGCGAGACCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGTGAATCCATCAAACTCTGGATGGAATCTGGACACAACACGTGTCCCAAAACGGGACAAACCCTGGTCCACACAGACCTTATCCCTAACCACGCACTCAAGAACATGATAGCATTATGGTGCCGTGAGCAGAGAATCCCGTTCGAAGCGGAAACGGTTCCAGGAAAAAACAACGGCGGCGTAACAAACAAAACCGCTTTGGAAGCCACACGAATGACGGCGTCGTTTTTAGTCGACAAACTAAAGGTCCCCTCAGAAGACACAAACGCTGTCGTTTACGAGCTTCGGGTTCTGGCGAAAACAGATTCAGATAGCCGAGCCTGCATTGCCGAAGCGGGAGCAATCCCGCTTCTGGTTCGTTACCTCAGCTTCGATGTTGGTTCGCAACACCCGAGCCTACAAGTTAACGCCGTGACGACGATCCTTAACCTCTCAATTCTGGAATCGAATAAAACAAGGGTAATGGAGACTGACGGCGCGTTAAACGGCGTCGCTGAGGTTCTTCGTTCGGGTGCCACGTGGGAGGCTAAGGCAAACGCGGCGGCTACGGTGTTTAGTTTATCAGGAGTACCCGCTTATAGAAAGAGACTCGGGAGGAAGACACGTGTCATAAGTGGATTGGTTGAGTTAGCAAAGAGTGGACCCGAGGGTGCACAAAGGGACGCGTTGGCCGCAATTCTTAACCTCGCGGCGGACCGGGAAACCGTTGCGAGGTTGGTGGAGTGCGGCGCGGTGGATATGACGGCGGAGGTGATGGCAACGATGCCTGTTGAAGCGGTGATGGTGCTCGAGGCGGTGGTGAAGCGCGGCGGTTTGGTGGCGGTGGCAGCGGCTTACGTTGGGATCAAGAAGTTAGGGAATGTTCTAAGGGATGGTTCGGAGAGGGCGAGGGAGAGTGCGGCGGCGACGCTTGTGACGATGTGTAGGAAAGGTGGATCGGAGATTGTGGCAGAGCTGGCAGCAATGCCGGGGGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTGGGGAGTGTGAGAGGAAGGAGGAAGGCAGCGACGTTGTTGAGGATTCTTCGGCGGTGGGCAGCGGGTTTGGATGGTGGTGCTAGTGAAGGATTCTCAACTACTACCATTGTCAATTCTTCAACTACCGTGGTGATTCCAACTACCACCAGTTCGTTAGCACAGTGA 2082 0.5091 MAISPQTFPTRKRRSSEGSFISPKITEFNLLHSLVHLTHQICSLNTTTNHFVLSRSSSSTIRKTQLLGVVFEDLLRVSNSTSFTPLCSHSLVLCLEEMYIVLHRIKTLIEDCSNGSKFSILMQIETVADNFHKLTGELSTLLDIFPLQELDLNDDVRELVLLIRKQCSESKPILGEEQLNLRNEVVSLLDGIKREIVPDQSQLASIFEKLEIRDSSSCRAEIENLQEEIQNRSEEQSKSEIGALIGLVRFAKCVLFGTSTPSPGSGSLRRIQSSELAVPADYRCPISLELMRDPVVVATGQTYDRESIKLWMESGHNTCPKTGQTLVHTDLIPNHALKNMIALWCREQRIPFEAETVPGKNNGGVTNKTALEATRMTASFLVDKLKVPSEDTNAVVYELRVLAKTDSDSRACIAEAGAIPLLVRYLSFDVGSQHPSLQVNAVTTILNLSILESNKTRVMETDGALNGVAEVLRSGATWEAKANAAATVFSLSGVPAYRKRLGRKTRVISGLVELAKSGPEGAQRDALAAILNLAADRETVARLVECGAVDMTAEVMATMPVEAVMVLEAVVKRGGLVAVAAAYVGIKKLGNVLRDGSERARESAAATLVTMCRKGGSEIVAELAAMPGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGASEGFSTTTIVNSSTTVVIPTTTSSLAQ* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01141 693 SUPERFAMILY ARM repeat 393 655 IPR016024 -
Rops4g01141 693 Pfam Armadillo/beta-catenin-like repeat 407 449 IPR000225 GO:0005515
Rops4g01141 693 Pfam U-box domain 278 349 IPR003613 GO:0004842|GO:0016567
Rops4g01141 693 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Rops4g01141 693 Gene3D - 363 583 IPR011989 -
Rops4g01141 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 355 IPR013083 -
Rops4g01141 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 463 IPR000225 GO:0005515
Rops4g01141 693 FunFam RING-type E3 ubiquitin transferase 272 351 - -
Rops4g01141 693 PANTHER U BOX DOMAIN-CONTAINING 69 656 - -
Rops4g01141 693 Coils Coil 215 235 - -
Rops4g01141 693 CDD RING-Ubox_PUB 279 331 IPR045210 -
Rops4g01141 693 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Rops4g01141 693 SMART arm_5 495 535 IPR000225 GO:0005515
Rops4g01141 693 SMART arm_5 406 450 IPR000225 GO:0005515
Rops4g01141 693 SUPERFAMILY RING/U-box 270 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01141 Rops-Chr4 30844723 30847119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01141 9 688 U-box Gene Family AT5G01830 56.579 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01141 - - tpra:123922727 1013.83