Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01112 ATGGATTCTGGGAAGCGTAGAAAAGCAGCTATGCAGCGCAAGCTGCAACAACTTCGATCTGTCACAAATTCAAGTGCAATGAACAAAGCTTCTATTATTGTTGATGCCACCAGATACATAGAGGAGTTGAAGCAAAAAGTGGAGGGAATGAACTCAGAGCTTGGAACTGCTGAATCATCATCAATCTCCCAAGATAAACTACCTATGGTCACCGTAGAAACCCTAGAAAAGGGTTTCCTCATTAACGTGTTTTCAGAAAGGAATTGCCCTGGTATGCTTGTGGCAATACTTGATGCCTTTGAAGAACTGGGACTGGATGTTCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTGGGAGGAGAAAATCAAGAGAACGAGAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTGCAAGCAATCAGCAGCATGGATTAA 453 0.4437 MDSGKRRKAAMQRKLQQLRSVTNSSAMNKASIIVDATRYIEELKQKVEGMNSELGTAESSSISQDKLPMVTVETLEKGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFQLEAVGGENQENESIDAQVVKQAVLQAISSMD* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01112 150 CDD ACT_UUR-ACR-like 90 146 - -
Rops4g01112 150 Gene3D - 2 59 IPR036638 GO:0046983
Rops4g01112 150 Coils Coil 1 21 - -
Rops4g01112 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 146 - -
Rops4g01112 150 Coils Coil 33 60 - -
Rops4g01112 150 ProSiteProfiles ACT domain profile. 81 150 IPR002912 -
Rops4g01112 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 57 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01112 Rops-Chr4 30104170 30105729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01112 5 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46510 30.833 2.36e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01112 - - ccaj:109816195 264.233