Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01105 ATGCAATCAAGGACTAGTGTTGGAGATGGTTCCCGTGTTAGTGCATCAAGTACACCTAGCAATACAAGCGGAGGATCTGATCCAGATGACATAGAATCACTAGGTGATATTTACATATGGGGAGAGGTTTTGTCAGATGGGGTTTCACCTGATGGGATGGGAATTCAGGTCCCTTGTAAGACAGATGTGTTGATTCCAAAGCCCCTGGAGTCAAATGTAGTTCTTGATGCTCATCACATTGCATCTGGTGCACACCACAGTGGTATAGTAACCAGGAAAGGAGAGCTTTTTACTTGGGGAGAAGAATCTGGGGGGAGACTTGGTCTTGGAATTGATAAAGATTTTCGACACCCTCATCTAGTTGAGTTTCTGGCAGTTACTGATTTGGATATTGTTGCATGTGGAGAGTATCATACATGTGCTGTATCTAAATATGATGATCTTTTCACATGGGGTGATGGTACACACAATGCTGGACTTCTTGGCCATGGGACTGAGGCTAGCCACTGGATACCAAAGAGGATTGATGGGGCTTTGGAAGGACTTCAAGTTGTATCTGTTTCATGTGGCACATGGCATTCAGCATTTGCAACCTCAAATGGGAAACTGTTTACCTTTGGTGAAGGAACATTTGGTGTCTTGGGCCATGGAGATCAAGAGAGTGTGTGGTATCCAAAGGAGGTACAATTATTAAGTGGACTAAAGACTATTAAGGTTGCATGTGGAGTATGGCATACTGCAGCTATTATAGAGGTTATGTTTCAGTCTGCTTCAAATGGTTCATCATGGAAGCTCTTCACATGGGGTGATGGTGACAAATACCGTTTGGGTCATGGAAACAAGGAAACATACCTACAACCAACCCGTGTGTCTCCTCTTATTGAATATAATTTCCATCAAATAGCATGTGGGCACACCTTGACTGTTGCTCTCACTACATCTGGTCATGTCTTTACAATGGGAGGCACTGAAAATGGTCAATTAGGAAATCCTAATTCGGCTGGAAAAGTACCTACTCTAGTCCAAGCGAAGTTGCTTGGTGAGTTTGTTGAGGAAATATCATGTGGAGCACATCATGTCGCAGTCTTGACATCGAGAAAGGAACTATATACATGGGGAAAAGGTGCTAATGGAAGATTGGGACATGGAGATACAGAAGATAGGAAATCTCCAACAGTGGTGGAAGCCTTGAAGGATAGGCATATAAAAAATATCTCATGTGGCTCAAACTTTACATCTTGTATATGCATCCATAAATGGGTCTCTGGAACTGATCAATCTGTCTGCTCTGGTTGTCGACAAGCATTTGGTTTGACAAGAAAAAGGCATAATTGTTATAATTGTGGATTGGTTTTTTGCCATACTTGTAGTTCTAAAAAGGCATTGAAAGCAGCTATGGCTCCGACACCGGAAAAACCTCATCGTGTGTGTGATACTTGTCATGCTAAGCTTAAAGTTGTTGAGGCTGGTGATGCTTCCAAGTTTACTGGAAAAAATACTCCTTCTCATATAAATAGCACGGAAAAATTAGGCCAGGGAGTAGTAAGGTCTGCTAGAATTCTCTTGTCTCCCATCACTGAGCCAGTGAAATACCTTGAGATAAAGAGTAGTAAGCCTGGAACCAAATATGGTTCTACTTCCTTTGTCCGAGCTTCTCAAGTTCCATCTCTTTTGCAATTGAAAGATATTGTTTTTCCAAGTTCATTGAGTTCCATCCAAAGTATTTTCAAGCCTTCTACACCTCTAAGTCCATCCCAAAATCCTCCGCAATCTCCACCTTCCGATTCAAGTCCCAAATCCCCATACCCTAGCAGATCAAGCCCTCCACGTTCTGCCTGTCCTAGATTTTCTGGAAGTCTTATCAATAGTTTGAGAAGGACAAGTGATCTTTTGAACAAAGAAGTCTCGAAATTGCAGGACCAAATTCAAAGTTTGAAGGAGAGAAGTGACATGAAAGATGTGGTAATTCAGAAGCTTCAGAGAAAGGCTACCGAAGCTATTGCCTTGGCTGCAGTGGAATCTTCTAATCTTAGAGAAGCAAAAGAATTTATTGAATCTACAACAGATCAGGTGAAGGAAGTGACTGAGAAGCTACCACTGGAAATTCCAGAAACTAAAATTTTGCTAACTTTGCAAACTCAAGCTGAAGAATTTGTAAAAGAAATTTCAGAATCTGAAACATCTTCCTCACTATCAAAGTTGGAGTCCAAGCAACAAAATGCACTTCATATACCTGCCGCAGGTAGTGGCTTTTCTAAACTACAAGAAAATAGACTAGAAAATGTTGATGCAGGAGTTGACACTTGTCGAGATGGAGGAAATTTCCTTGATGAAATTAATGGATCAAAGTTAGAGTCTGTGCAACAAAATGCACCTGATACACCTACCTTAGATAGTGGCACTTTTGAACTGCAACAACACAGACTACAAGAAAATGCCGATGCTGTAGGAGTTGAGCCTTGTCAAGAAGGAAGAACTATTCATGAAGAAATTAATGGATCAAAGTTAGAGTCTGTGCAACAAAATGATATACCTACCTTAGATAGTGGCACATCTGAACTGCTAGAACACAGACTAGAAGAAAATGCTGATGCTGTAGGAGTTGACCATTGTCAAGATGGAAGAAACATTGTAGAAATTAATGGATCAAAGTTGGAGTCTGAGCAACAAAATGCACCTGATATATCTACCTTAGAAAGTGTAATTTCTGAACTGCAACACAGACCACAAGAAAATGTTGATGCTGTAGGAGTTGACCCTTACCAAGATAGAAGAAATTCTCTTGAACAAGTCAATGGATCAAAGTTGGAGTCTGAGCAACAAAATGCACCTGATATACCTACCTCAGAGAGTGACACTTCTGAACTGCAAGAAAACAGACTAGAAGAAGTTGCTAATGCCGCAGGATTTGATCAATCTGAGGCCAGAGGACATGTCCTGCAAGGAAGTCATGGATCATCTATATCTAGTGCTGGTGATGCAGAGTCTCCACAAAACTCAGAAGATGGTTCAAGATCACTGGACTCTTCAGGACCTGGGAGACCACAAGAAACACAAATCATTGAAAAATTTGAATCTGGTGTTTATGTGATACTCATGTTACGGTCAGATGGTATCAAAATTTTTAAACGAGTTAAATTCAGTAAGCGAAGGTTCACTCAAAATCAAGCAGAAGAATGGTGGAGCCAAAACAAAGGTAGGGTTCTTAGGAAATACTGTCCAACACATCAAAAGCTAACAATTGGATCACCTAACATTACACCACATGCTAATGAAAATATTGAAGCATCGCCTTCCTTAACTTAA 3306 0.4074 MQSRTSVGDGSRVSASSTPSNTSGGSDPDDIESLGDIYIWGEVLSDGVSPDGMGIQVPCKTDVLIPKPLESNVVLDAHHIASGAHHSGIVTRKGELFTWGEESGGRLGLGIDKDFRHPHLVEFLAVTDLDIVACGEYHTCAVSKYDDLFTWGDGTHNAGLLGHGTEASHWIPKRIDGALEGLQVVSVSCGTWHSAFATSNGKLFTFGEGTFGVLGHGDQESVWYPKEVQLLSGLKTIKVACGVWHTAAIIEVMFQSASNGSSWKLFTWGDGDKYRLGHGNKETYLQPTRVSPLIEYNFHQIACGHTLTVALTTSGHVFTMGGTENGQLGNPNSAGKVPTLVQAKLLGEFVEEISCGAHHVAVLTSRKELYTWGKGANGRLGHGDTEDRKSPTVVEALKDRHIKNISCGSNFTSCICIHKWVSGTDQSVCSGCRQAFGLTRKRHNCYNCGLVFCHTCSSKKALKAAMAPTPEKPHRVCDTCHAKLKVVEAGDASKFTGKNTPSHINSTEKLGQGVVRSARILLSPITEPVKYLEIKSSKPGTKYGSTSFVRASQVPSLLQLKDIVFPSSLSSIQSIFKPSTPLSPSQNPPQSPPSDSSPKSPYPSRSSPPRSACPRFSGSLINSLRRTSDLLNKEVSKLQDQIQSLKERSDMKDVVIQKLQRKATEAIALAAVESSNLREAKEFIESTTDQVKEVTEKLPLEIPETKILLTLQTQAEEFVKEISESETSSSLSKLESKQQNALHIPAAGSGFSKLQENRLENVDAGVDTCRDGGNFLDEINGSKLESVQQNAPDTPTLDSGTFELQQHRLQENADAVGVEPCQEGRTIHEEINGSKLESVQQNDIPTLDSGTSELLEHRLEENADAVGVDHCQDGRNIVEINGSKLESEQQNAPDISTLESVISELQHRPQENVDAVGVDPYQDRRNSLEQVNGSKLESEQQNAPDIPTSESDTSELQENRLEEVANAAGFDQSEARGHVLQGSHGSSISSAGDAESPQNSEDGSRSLDSSGPGRPQETQIIEKFESGVYVILMLRSDGIKIFKRVKFSKRRFTQNQAEEWWSQNKGRVLRKYCPTHQKLTIGSPNITPHANENIEASPSLT* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01105 1101 Gene3D - 256 420 IPR009091 -
Rops4g01105 1101 SUPERFAMILY FYVE/PHD zinc finger 419 486 IPR011011 -
Rops4g01105 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 146 200 IPR000408 -
Rops4g01105 1101 MobiDBLite consensus disorder prediction 979 1016 - -
Rops4g01105 1101 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 254 - -
Rops4g01105 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 145 IPR000408 -
Rops4g01105 1101 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Rops4g01105 1101 PRINTS Chromosome condensation regulator RCC1 signature 96 112 IPR000408 -
Rops4g01105 1101 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Rops4g01105 1101 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Rops4g01105 1101 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Rops4g01105 1101 PRINTS Chromosome condensation regulator RCC1 signature 203 217 IPR000408 -
Rops4g01105 1101 PRINTS Chromosome condensation regulator RCC1 signature 146 162 IPR000408 -
Rops4g01105 1101 Coils Coil 621 648 - -
Rops4g01105 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 200 249 IPR000408 -
Rops4g01105 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 265 311 IPR000408 -
Rops4g01105 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Rops4g01105 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 369 415 IPR000408 -
Rops4g01105 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 93 142 IPR000408 -
Rops4g01105 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 147 196 IPR000408 -
Rops4g01105 1101 MobiDBLite consensus disorder prediction 1 28 - -
Rops4g01105 1101 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Rops4g01105 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Rops4g01105 1101 Pfam FYVE zinc finger 419 484 IPR000306 GO:0046872
Rops4g01105 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 252 IPR000408 -
Rops4g01105 1101 MobiDBLite consensus disorder prediction 576 617 - -
Rops4g01105 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Rops4g01105 1101 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 19 685 - -
Rops4g01105 1101 MobiDBLite consensus disorder prediction 931 956 - -
Rops4g01105 1101 Coils Coil 677 697 - -
Rops4g01105 1101 Gene3D - 8 255 IPR009091 -
Rops4g01105 1101 CDD FYVE_like_SF 429 481 - -
Rops4g01105 1101 ProSiteProfiles BRX domain profile. 1018 1073 IPR013591 -
Rops4g01105 1101 SUPERFAMILY RCC1/BLIP-II 34 420 IPR009091 -
Rops4g01105 1101 MobiDBLite consensus disorder prediction 582 608 - -
Rops4g01105 1101 SMART fyve_4 417 486 IPR000306 GO:0046872
Rops4g01105 1101 MobiDBLite consensus disorder prediction 931 954 - -
Rops4g01105 1101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 496 IPR013083 -
Rops4g01105 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Rops4g01105 1101 Pfam Transcription factor regulating root and shoot growth via Pin3 1018 1072 IPR013591 -
Rops4g01105 1101 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01105 Rops-Chr4 29844287 29851739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01105 1017 1072 Major Intrinsic Protein MIP AT1G31880 39.286 3.99e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01105 - - lang:109340921 1291.17