Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01101 ATGTCGTGCTCCAATATCACTATGTTTGGCTTCCTCCAAAACTTCAAAGCTGCTGTTGTCTATGACAGGGGTTGTAGCTATGCATGGTCTAACCTCGGTGTCTCGCTGCAACTATCAGAAGGACCATCACAAGCTGAAGAAGTATGCGAGCAAGTTGTGCCTTTGGCAACAACACCACAAGCACATGCTATGCGAAGAGGTCCAGTGACTCTCCATTCTGAGTTGTGGCACGCGAGGCATCCAACAACGAAACTGGTTCAGTTGGATGATGTCATACGTCCTATATCTCGAGTTTTCTTTACTGAACTTGGTGGATCCACACTGGACTCACATCATGGTTTTGTCGTCGAATGTGGAACCAATAGGGACGTGGAACTTGGCTTCCATGTGGGTAACTCAGAACTGGAGAACATTTCTTCCGGGGTGTTAGGTGATGAACATGTGAATTCAAACACCCAATCAGAGGAGGTCTCAGATTATTCCCATGTTCCAGGACGTGCAATCCTTCACTATGGTTGTCACCGGCATGGTGCTAGACTTACAACATATGAGCATGGTTTTCATGTTGGGAAACTATCAAGGCGCAAGGTGGACTGGCTCACTGACGAGATGAGAAGCAATGACCATGCAGTCTCAGCCACCCATGGAGACGTGGACCAAAACACTCGTGATATCATCATGCGTGAATTTCGCTCTGGCTCTTTAAGAGTTCTAGTTACCCCTGGCCTCTTGGCTCGTGGTATTGATGTGCAGCAAGTGTCTCTGGTCATAAACTATGACCCACTCACCTATACGGACATGCCTTTTGAGGACAACCAAGGTGAAGCATGCCCACATGACAGGGTGCTTCGGGTTGCATGGGTGCAGCTGGGTCTTATTGAAGGTCTTATGGCTAAGATGTATTCCGGAGCACTTCAGCAAGTTGCAGCTTGA 933 0.4802 MSCSNITMFGFLQNFKAAVVYDRGCSYAWSNLGVSLQLSEGPSQAEEVCEQVVPLATTPQAHAMRRGPVTLHSELWHARHPTTKLVQLDDVIRPISRVFFTELGGSTLDSHHGFVVECGTNRDVELGFHVGNSELENISSGVLGDEHVNSNTQSEEVSDYSHVPGRAILHYGCHRHGARLTTYEHGFHVGKLSRRKVDWLTDEMRSNDHAVSATHGDVDQNTRDIIMREFRSGSLRVLVTPGLLARGIDVQQVSLVINYDPLTYTDMPFEDNQGEACPHDRVLRVAWVQLGLIEGLMAKMYSGALQQVAA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01101 310 SMART helicmild6 198 286 IPR001650 -
Rops4g01101 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 261 IPR027417 -
Rops4g01101 310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 153 310 IPR001650 -
Rops4g01101 310 Pfam Helicase conserved C-terminal domain 206 261 IPR001650 -
Rops4g01101 310 Gene3D - 192 267 IPR027417 -
Rops4g01101 310 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 89 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01101 Rops-Chr4 29786834 29787928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01101 193 260 Eukaryotic Initiation Factors Gene Family AT1G72730 85.294 7.52e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01101 - - csin:114298710 136.346