Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01090 ATGTCTTTTAGTTTCATTGATCTTCTTTCCACCAATAACAATGGTAACATGATCATAGATGATGATGATAAACATGGAATTTCTAAAGACAATGGACTTGAAGTTGATAATAATAACTTCATATCATTCTCACCTCCTTCCTCATCAATTTTTCCTTCTTATTCTGATTTTCCACCTGGTTTCAGCCCATCAGAGCTGTTGAATTCACCTTTGTTCCTTTCTTCTCCAAATATTCCTGCATCTCATACAATTGACCCTTCTTCTTCTGACCAGAACTTAAACCGGAGAAACAGTTTAAATGAGAACCAAGAAAGCAACAAAGAGGAAGAAAGAAACTACTCTAACCTTTCTTTCCAAACACAGACAAAGCACATGCCTCTCTTTCAGTCTTCCATAAGCATGTTTCAAACTCAGGAGCCAGTAAATAAACAGGACACATTGATATTCAATGAAACTGGAAAGCAAACCGATTTTTCATTTGAGAGGACATCAACAAAATCTGAATTTCCAACCACTCAGCACTTCTCTTCAGAAATGGCCACAACCAAACCTGAAACACAAAGTAATTCAGCTCCTGGGTCTGGTTATTTTAACTACAGTAATGCTTCTATGTCCATAAGAGAACAAAGGAGATCAGAAGATGATGGGTACAAGTGGAGGAAATATGGAGAGAAACAAGTGAAAGGGAGTGAAAATCCACGCAGTTATTACAAGTGCACATATCCAAGATGCTCAATGAAGAAGAAAGTTGAAAGGTCTTTGGATGGAGGTCATATTACTAAAATAGTATACAATGGAAGTCATAACCATCCCAAGCCTCAGTCTACCAAAAGAACAAGTTCTCAATCAATTCATCAACCCTCTTCATCCTGCACCAACTCAGGGATTTCTGATCAATCTGTGGAAATGGAAGACTTTGAGCAAACATCACAAACTTGTTATTCTGGAGGAGATGATGGTGACCTTGGACCAGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATGACAATTCCTATTCCAATGCTGGGAGCAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATACTTGATGATGGCTATAGGTGGAGGAAATACGGACAGAAAGTAGTTAAAGGAAACCCAAATCCAAGGAGCTACTACAAGTGTGTAGCCTCAGGTTGTCCAGTGAGAAAACATGTTGAGAGAGCTGCACATGATACGAAAGCTGTAATCACAACTTATGAAGGGAGACACAACCATGAGGTATCTGTAAGACGAGGAAGTGCAAGTTATAACATGAACAAAACTTCTCTGAATAGCAACACCAGCACTGTAACTACCCCTGCCCCTATAAGGCCCTCGGTGGTGAATAATAATTCTAACCTAGCAAGTTTGACTAATTCACTTGTTGATACAAAGTTACCAATTTCTGGAAGTCAAGAACCTTTTCAGCTGGACATGCTGATAAGCCCTGGAAGCTTTGGATATTGGGGTTTGCACAAATCAATAGGTTCAGATGCCAATCCTGAACAACAGTCAGACACTGCAAACTCGGCTAAGGATGACTCATTGTTTCAGTCTTTTCTTTCAAAGAATTTTCAGATTTGGAATTAG 1617 0.3902 MSFSFIDLLSTNNNGNMIIDDDDKHGISKDNGLEVDNNNFISFSPPSSSIFPSYSDFPPGFSPSELLNSPLFLSSPNIPASHTIDPSSSDQNLNRRNSLNENQESNKEEERNYSNLSFQTQTKHMPLFQSSISMFQTQEPVNKQDTLIFNETGKQTDFSFERTSTKSEFPTTQHFSSEMATTKPETQSNSAPGSGYFNYSNASMSIREQRRSEDDGYKWRKYGEKQVKGSENPRSYYKCTYPRCSMKKKVERSLDGGHITKIVYNGSHNHPKPQSTKRTSSQSIHQPSSSCTNSGISDQSVEMEDFEQTSQTCYSGGDDGDLGPEAKRWKGENENDDNSYSNAGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVASGCPVRKHVERAAHDTKAVITTYEGRHNHEVSVRRGSASYNMNKTSLNSNTSTVTTPAPIRPSVVNNNSNLASLTNSLVDTKLPISGSQEPFQLDMLISPGSFGYWGLHKSIGSDANPEQQSDTANSAKDDSLFQSFLSKNFQIWN* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01090 538 Gene3D WRKY domain 351 417 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops4g01090 538 Gene3D WRKY domain 198 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops4g01090 538 MobiDBLite consensus disorder prediction 261 348 - -
Rops4g01090 538 SUPERFAMILY WRKY DNA-binding domain 210 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops4g01090 538 ProSiteProfiles WRKY domain profile. 359 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01090 538 ProSiteProfiles WRKY domain profile. 214 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01090 538 MobiDBLite consensus disorder prediction 267 316 - -
Rops4g01090 538 MobiDBLite consensus disorder prediction 78 100 - -
Rops4g01090 538 FunFam WRKY transcription factor 33 351 417 - -
Rops4g01090 538 SMART WRKY_cls 213 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01090 538 SMART WRKY_cls 364 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01090 538 MobiDBLite consensus disorder prediction 321 335 - -
Rops4g01090 538 MobiDBLite consensus disorder prediction 160 196 - -
Rops4g01090 538 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 130 443 IPR044810 GO:0003700
Rops4g01090 538 MobiDBLite consensus disorder prediction 78 116 - -
Rops4g01090 538 FunFam WRKY transcription factor 200 274 - -
Rops4g01090 538 Pfam WRKY DNA -binding domain 214 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01090 538 Pfam WRKY DNA -binding domain 365 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g01090 538 SUPERFAMILY WRKY DNA-binding domain 356 423 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01090 Rops-Chr4 29338174 29341704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01090 207 497 WRKY Transcription Factor Family AT2G38470 51.077 1.29e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops4g01090 WRKY 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01090 K13424 - gmx:100127367 650.203