Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01075 ATGGGAAACAAAAGTTGGCATGCTAAAGATTTTAACAAAGACCCACTTCAGTTTTTGCTCTCTTCTAAAAATGGTGATAGAAGGAAGAAATGGAGGAACCATGAGGGTAGTTTCATTTGCTTAGCCTTTTTCCTGTTTCTGGTTTCCACCACTCAACCTGTCTCTGGCATTTTATGGGATGGGGTGGTTGTTACTCAAGCTGATTATCAAGCTCTAAGGGCTATTAAGCATGAGCTAATTGATTTCAAAGGGGTTTTGAGAAGCTGGAATGATAGTGGTTTAGGTGCTTGTTCAGGTGGTTGGGCAGGAATCAAATGTGTGAAAGGACAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGCAGAATCTCAGAGAAAATTGGTCAGCTTCAATCTCTTAGGAAGCTAAGTCTCCATGACAATGTTCTAGCTGGTCCTGTCCCTTCGTCTCTTGGCTTCCTTCCTAATCTTAGAGGAGTTTATCTCTTCAATAACAGGCTTTCAGGTTCTATTCCTCCTTCTATTGGCAATTGTCCAATGCTTCAGTCTTTTGATGTTAGCAACAATTCCCTCACTGGTAAAATCCCTCCTGGTTTAGCTAATTCCACTAGGATATTCAGGATCAATTTGAGCTTTAACTCTTTTTCTGGATCCATTCCTAGTAGTTTTACTATGTCTCCTTCTCTAACTATTCTTGCCCTCCAACACAACAATCTATCTGGTTCTATCCCAAATTCTTGGGGTGGAATGGGAAAGAAAGGTTCCCAACTTCAAGTTTTGACCCTTGATCACAATCTCATTTCTGGAACCATCCCAGTTTCTCTAAGTAAGCTGGCTTTTCTAGAAAATGTTTCTTTAAGTCATAACCAGATTGCAGGACCTATTCCAAGTGAACTAGGTGCACTTTCCAGGCTAAGAATTCTTGATCTATCAAACAATGCAATCAATGGCAGCTTTCCTGCTAGCTTCTCTAACCTCTCTTCTCTTGTTTCATTGAATCTAGCTAGCAATCAACTTGAAAACCATATTCCAGATACTTTGGATAGGTCACACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGTTTGATGGCCATATTCCATCAACAATTGGGAACATCTCAAGCATTAGCCAAATTGATTTCTCTGAAAATAAATTTGTAGGAGAAATTCCAGATTCCCTTACCAAACTTGCAAATCTAAGTTCATTCAATGTCTCTTACAACAATCTATCTGGTCCTGTCCCATCTCTACTTTCCAAAAGATTCAATGCTAGTTCATTTGCAGGGAATCTTGAGCTATGTGGGTACATCAGTTCACAACCATGCCCTTCACCCCCACCTCATAATCTTCCAGCTGAATCACCAAAACCTCCTTCCAAGCCACATCACCGGAAATTAAGTACCAAGGACATAATCCTCATAGTAGCAGGTGTTCTTCTGTTAATTTTGCTATTATTGTGCTGCTTTTTGCTATGTTGTTTGATCAGGAAAAGAGCTGCTTCAAGCAGAAAGAGTGGCAAGGCTGCTAAGGCTACAGCTTCTGCTAGGAGTATTGAGAAAGGTGCCCCTGCTAGTGGTGAAGTTGAATCAGGAGGTGAAGCTGGTGGGAAACTAGTCCACTTTGATGGGCCTTTTGTATTCACTGCTGATGATCTTTTGTGTGCCACTGCTGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAGGCAACACTGGAAGATGGGAACCAAGTCGCTGTGAAAAGGTTAAGGGAGAAAACTACTAAAGGTCAGAAGGAGTTTGAAGCTGAAGTTGCTGCACTTGGCAAAATTAGACACCCAAATCTCTTAGCCCTTAGAGCCTATTATTTAGGACCCAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACCAAAGGAAGCCTAGCATCATTCCTTCATGCTCGTGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAAATAGCAATTGGAGTCACCAATGGTCTTTGCTATCTTCACAACCAAGAGAATATAGTACATGGAAATCTTACCTCTAGCAATATACTATTAGATGAGCAAACAAATGCCCATATCACAGATTTTGGTCTTTCAAGGCTAATGACAACTTCTGCCAACACCAACATCATTGCAACAGCAGGAAGTCTTGGTTACAATGCACCAGAACTTTCAAAGACTAAGAAGCCTAATACAAAGACTGATGTGTATAGCCTTGGTGTGATCATTTTGGAGCTCCTAACTGGTAAACCACCTGGAGAACCAACCAATGGCATGGACTTGCCTCAATGGGTGGCTTCCATAGTGAAAGAGGAGTGGACTAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAACCATAGGGGATGAGTTGCTTAATACATTGAAATTGGCTTTGCATTGTGTGGATCCTTCTCCAGCTGCTAGGCCTGAAGTTAAGCAAGTTTTGCAGCAGTTAGAGGAGATTAAGCCTGAGTTGGCTGCTGGTGATGATGATGATGGAGCTAAGGTCCAAACAACTGAATAA 2544 0.4143 MGNKSWHAKDFNKDPLQFLLSSKNGDRRKKWRNHEGSFICLAFFLFLVSTTQPVSGILWDGVVVTQADYQALRAIKHELIDFKGVLRSWNDSGLGACSGGWAGIKCVKGQVIAIQLPWRGLGGRISEKIGQLQSLRKLSLHDNVLAGPVPSSLGFLPNLRGVYLFNNRLSGSIPPSIGNCPMLQSFDVSNNSLTGKIPPGLANSTRIFRINLSFNSFSGSIPSSFTMSPSLTILALQHNNLSGSIPNSWGGMGKKGSQLQVLTLDHNLISGTIPVSLSKLAFLENVSLSHNQIAGPIPSELGALSRLRILDLSNNAINGSFPASFSNLSSLVSLNLASNQLENHIPDTLDRSHNLSVLNLKNNKFDGHIPSTIGNISSISQIDFSENKFVGEIPDSLTKLANLSSFNVSYNNLSGPVPSLLSKRFNASSFAGNLELCGYISSQPCPSPPPHNLPAESPKPPSKPHHRKLSTKDIILIVAGVLLLILLLLCCFLLCCLIRKRAASSRKSGKAAKATASARSIEKGAPASGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFEAEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIAIGVTNGLCYLHNQENIVHGNLTSSNILLDEQTNAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIILELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPTIGDELLNTLKLALHCVDPSPAARPEVKQVLQQLEEIKPELAAGDDDDGAKVQTTE* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01075 847 Gene3D Ribonuclease Inhibitor 224 320 IPR032675 -
Rops4g01075 847 SMART LRR_typ_2 400 423 IPR003591 -
Rops4g01075 847 SMART LRR_typ_2 156 180 IPR003591 -
Rops4g01075 847 SMART LRR_typ_2 304 327 IPR003591 -
Rops4g01075 847 SMART LRR_typ_2 328 352 IPR003591 -
Rops4g01075 847 Pfam Leucine rich repeat 304 341 IPR001611 GO:0005515
Rops4g01075 847 Pfam Leucine rich repeat N-terminal domain 67 106 IPR013210 -
Rops4g01075 847 SUPERFAMILY Protein kinase-like (PK-like) 561 829 IPR011009 -
Rops4g01075 847 CDD STKc_IRAK 563 828 - -
Rops4g01075 847 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 258 828 - -
Rops4g01075 847 FunFam Leucine-rich repeat receptor-like protein kinase 543 633 - -
Rops4g01075 847 Pfam Protein tyrosine and serine/threonine kinase 561 825 IPR001245 GO:0004672|GO:0006468
Rops4g01075 847 SUPERFAMILY L domain-like 105 442 - -
Rops4g01075 847 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 65 250 - -
Rops4g01075 847 Gene3D Ribonuclease Inhibitor 321 447 IPR032675 -
Rops4g01075 847 Gene3D Ribonuclease Inhibitor 65 223 IPR032675 -
Rops4g01075 847 FunFam Pollen receptor-like kinase 1 634 839 - -
Rops4g01075 847 ProSiteProfiles Protein kinase domain profile. 557 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01075 847 Gene3D Phosphorylase Kinase; domain 1 563 634 - -
Rops4g01075 847 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 251 448 - -
Rops4g01075 847 Gene3D Transferase(Phosphotransferase) domain 1 635 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01075 Rops-Chr4 29100380 29103498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01075 59 830 Receptor kinase-like Gene Family AT3G51740 70.619 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops4g01075 PK_Tyr_Ser-Thr 9.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01075 - - gmx:100799290 1354.35