Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01073 ATGAGTAACAATTTAGAGACTTCTAAACAGAGTTCTGTTGTGGATGCTGGCTGCAGAGACAGGAAATCCTTCAAGAGACGTAGGGTTGGAAGTGATTCTGCGGTAGATGCTCTTGAGAAATGGAAGAAGCACAACAAGGAACTTCAATTTGGAAATAATGGGGTGCAAGTGATTCATAAAGTTCCTGCTAAGGGCTCCAAGAAAGGGTGCATGAGAGGTAAAGGAGGGCCTCAAAACTCTGATTTCAAGTACAGAGGTGTGAGACAAAGGATTTGGGGTAAGTGGGTAGCTGAAATTCGAGAACCTATCAATAATGTTAACCATGTGAGTAAGAAACCAAAACGGCTTTGGCTTGGAACTTTCTCTACTGCAATTGAAGCTGCTCTTGCTTATGATGAAGCAGCCAGGGCCATGTATGGTTCTTGTGCCATATTGAACTTTCCTCAGCATGATGTGGAGTCAATAAGCTCTAATGGATCACCAAGTAAGTCAGAAGCTTCAATGAAAAATGTTGAGATTGCTACAGGTAAGCATTTGGAAGATAATCTTCATCAGTTCATTGAAGATAAACCCAATTGTTCTGAGGTTGGAGTTTTGGAGGAAACAAAGGAAAGACAAGATCTTTTAGAGGTTTGTATGGCTGACAACACTAAAGAGGAGCTAAAGGTGTTGCCAATTGGCAGTTTCCAAGATCTCACAAATGAGAAATGTGAGGCAAGGATTCATCATGGGCCTTTCAATGATATCAAAGCAAAAACACATGGAGAAAGTGAAGGAATAGAGAGAGAATCAGAAGTTTTGAAAATTTCTGGCACCAGTGTAGAGGTTAAGGATATGGCCATGAATGCTGGAACTGGTTATAGAGCTACTGATTGTGGGATTTCAGTGAAGAGTGAAGAAACAATGGAAGAACCCGCGGGAACTTTCTCATCAAGTGAGTTGAGCTGTACCAACCCTTGTGATGGATGCATGCATAATAAGCTACCCGATGAGAATTGCAATCCAAGAACTAGTTGTGATAATCACAATGACATTAAAACTGAAGCATGTTTCTTGAAGAAACAGATGGAGCTGGAGGAAATAATTTCTGACATTCCAAGACTTTGTAGCAACAAGTGCTCAAAGAGTAATCATATTCACTCACAAAATGAGCAATATAGATACCAACATTCTGATCATGTTAAAGTTGAGAAGCCAGTAATGCCAGTAGAAGCAAAATTGGAGCAACCTTGTGATTGCTATGGTGGGGAGATGAAAAATGAGGTTAAAAGTTTTGAATGCAAGCCAAGAATTCAGTGCACTTCTTCTGGTGATTGCAAGATTGGGGCACCTATAAAGAGGGAATCCATGCAGGGAATTCATCTGGTTCCGGGGGATAATGTTGGCCTAATTGATAGAATATCTGAAGTTGAGGCTTTGAGCATTAAAAATAATAAAAATTTTAAATTGCAAGAAAAAGGAAATGATGAAAATGTGTTAGCCAGGTTTAGTTCTGGACAAAGTAGGAAGATGTTAGATTTTTCTCAACAGTTGCAGAAACTTGGTGGTCATAAGCTTGAACCTTTGGATAATATGGAGGTTGCTGACCGAGAAGTGGATTATGATTATAGTTTCTTGAGACCTGACTATGATTTTGGCTTATTGGAAGAGCAGATGTTACTTGATTTATGTTTTTCACATATAGGAGCATAA 1692 0.3942 MSNNLETSKQSSVVDAGCRDRKSFKRRRVGSDSAVDALEKWKKHNKELQFGNNGVQVIHKVPAKGSKKGCMRGKGGPQNSDFKYRGVRQRIWGKWVAEIREPINNVNHVSKKPKRLWLGTFSTAIEAALAYDEAARAMYGSCAILNFPQHDVESISSNGSPSKSEASMKNVEIATGKHLEDNLHQFIEDKPNCSEVGVLEETKERQDLLEVCMADNTKEELKVLPIGSFQDLTNEKCEARIHHGPFNDIKAKTHGESEGIERESEVLKISGTSVEVKDMAMNAGTGYRATDCGISVKSEETMEEPAGTFSSSELSCTNPCDGCMHNKLPDENCNPRTSCDNHNDIKTEACFLKKQMELEEIISDIPRLCSNKCSKSNHIHSQNEQYRYQHSDHVKVEKPVMPVEAKLEQPCDCYGGEMKNEVKSFECKPRIQCTSSGDCKIGAPIKRESMQGIHLVPGDNVGLIDRISEVEALSIKNNKNFKLQEKGNDENVLARFSSGQSRKMLDFSQQLQKLGGHKLEPLDNMEVADREVDYDYSFLRPDYDFGLLEEQMLLDLCFSHIGA* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01073 563 CDD AP2 83 150 IPR001471 GO:0003700|GO:0006355
Rops4g01073 563 Gene3D AP2/ERF domain 83 149 IPR036955 GO:0003700|GO:0006355
Rops4g01073 563 Pfam AP2 domain 83 140 IPR001471 GO:0003700|GO:0006355
Rops4g01073 563 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Rops4g01073 563 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Rops4g01073 563 FunFam Ethylene-responsive transcription factor 2 83 149 - -
Rops4g01073 563 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 21 376 - -
Rops4g01073 563 SMART rav1_2 83 154 IPR001471 GO:0003700|GO:0006355
Rops4g01073 563 ProSiteProfiles AP2/ERF domain profile. 83 148 IPR001471 GO:0003700|GO:0006355
Rops4g01073 563 SUPERFAMILY DNA-binding domain 83 149 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01073 Rops-Chr4 29088407 29090098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01073 25 164 AP2-EREBP Transcription Factor Family AT2G40340 47.917 2.19e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops4g01073 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01073 - - aprc:113861479 452.981