LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops4g01072	ATGGCATATTCATCTTCCCGAGTTTCTAGAATAGGATACATTGTGTTTCTTCTCTTTCTCTGTCTCTCGTTTGTTGTAGTGGGAGCCTTAAGGGGAGTGTCAGACAATGCCTTTTCACCATTTCCAAGAACAAGGTACGACGTTTTTGTTAGTTTCAGTGGACAAGACACTCGCCGAGGTTTCCTTAGTCACTTGGTTAAGGGTTTCCGTAGAAAGAAAATCCATACCTTTGTGGATTATAAACTTCAGAGAGGAGAAGAGATATCAACAGAACTTTTTGGTGCAATTGAGAGGTCCTCCATTTCATTGGTGCTATTCTCAGAAAAATATGCCTCTTCATATTGGTGCTTAGAAGAGCTAGTGAAAATACTCGAGTGCAAACAGAAACATGGGCAGATTGTTATACCCGTTTTCTACCATGTGGCTCCCTCTGATGTGCGGCATCAAAGGGGGAGTTATGGAAATGCTCTTGCTCGACTTGAAAAGAAATACGGTTTGTTCAGGGTGCAAATCTTTAGATCTGCCTTGGAGAAAGCTGCTAATTTATCAGGATTTGATTCATCGGAATTCCGGAACGAAGATGAACTTCTTGATGTAATCATCAAATTCATATTGACGAAGCTGAATTGTATGCACCAAGTTAACTCAAAGGGACTTATTGTAATAGACAAACCAATTGCAGAGGTAATATCATTGTTACACCAAGAGTCAGAAGAAGTCCGTGTTATAGGAATTTGGGGTATGGGTGGTATTGGTAAGACCACCATTGCAGAAGAAGTATTTTACAGGCTGTGTTCTGAATATGAAGGTTGTTCTTTTTTGGCAAATGTAAGGGAAGAGATCGAAAGACATGGAATAATTTCTTTGAAGAATAAACTTCTCTCTACACTATTGCAAGAAGATTTGAAAATTGACACAGCATATAGATTGCCCGCTTCTGTTAGCACAAGGCTTAGTTGTATGAGGGTTCTTATTGTTCTTGATGATGTGAATGATATAAATCAACTTGAAATTTTAGTTGGAGCATTTGATTGGTTTGGATCAGGTAGTCGAATCATTGTTACAACTAGAGATAAGCAAGTGCTTGTTGCTAATGGAGTTAATGATGTATACCAGGTTGGATTATTGAGTTCCAGAGAAGCACTTGAGCTTTTCAGTTTGCGTGCCTTTAAACAAAGGCATCCTGAAATGGAGTATTGTGAGCTAACAAAGAGGGTGGTCAATTATGCCAAAGGCATTCCATTGGTTCTTAAAGTTTTGGGCCGTCTTCTTCGTGGGAAAGATAAGGAAATATGGGAAAGTCAGCTAGACAAACTCAAGAAAATGCCAATTAAGGAAGTTCACAATGTAATGAGACTGAGTTATGATGATCTAGATCGCACAGAGCAAAAGATATTTTTGGATCTTGCATGTTTCTTCAGTGGATTGATTTTGGAGGTGGGGTACATAAAAATTTTATTGAAAGATCATGAAGGTGACAATTCAATTTGTAATGGGTTGGAAAGGCTGAAAGATAAAGCTCTTATAGCTATATCAGAAGATAACGTTGTATCTATGCATGATATTATACATGAAGTGGGTCGGGAGATTGTTCGCCAAGAATCTAGTAACCCTGGAAACCGTAGTCGTTTGTGTGATCCTGATGACATCTATGAAGTATTGAAAAATGACAAGGGAACTGAGGCCATTAGAAGCATAAGGGCACACTTGTCAGCAATTAGGAGGTTAAAGCTAAGCCCTCACATATTTGCTAAGATGATTCAACTACAATTTCTTGATTTTCACACTGAATATTATGATCAAGACAGCTTGGATCTTCTTCCTCATGGGCTTGAATCTTTTCCAAATGAATTAAGATATCTTCGTTGGATGAATTACCCTCTGAAATCCTTGCCAGAGAAGTTCTCTGCTGAAAATCTTGTTATATTAGACTTATCATATAGCCGACTGGAAAAGCTTTGGCATGGAGTGAAGGATCTTGTGAATTTAAAAGAAGTTAAACTCTTTGGTTCCAAATTTCTGAAGGAGCTGCCAGACTTTTCAAAAGCCATTAATCTGGAATTACTGGATATCCGTTTCTGTGATTTGCTCTCTGGACAAGCTTGTGAAATTCGTTTGGGTTCGCTGCCCTCCCCCTGCCAAATATACAAATGA	2154	0.3863	MAYSSSRVSRIGYIVFLLFLCLSFVVVGALRGVSDNAFSPFPRTRYDVFVSFSGQDTRRGFLSHLVKGFRRKKIHTFVDYKLQRGEEISTELFGAIERSSISLVLFSEKYASSYWCLEELVKILECKQKHGQIVIPVFYHVAPSDVRHQRGSYGNALARLEKKYGLFRVQIFRSALEKAANLSGFDSSEFRNEDELLDVIIKFILTKLNCMHQVNSKGLIVIDKPIAEVISLLHQESEEVRVIGIWGMGGIGKTTIAEEVFYRLCSEYEGCSFLANVREEIERHGIISLKNKLLSTLLQEDLKIDTAYRLPASVSTRLSCMRVLIVLDDVNDINQLEILVGAFDWFGSGSRIIVTTRDKQVLVANGVNDVYQVGLLSSREALELFSLRAFKQRHPEMEYCELTKRVVNYAKGIPLVLKVLGRLLRGKDKEIWESQLDKLKKMPIKEVHNVMRLSYDDLDRTEQKIFLDLACFFSGLILEVGYIKILLKDHEGDNSICNGLERLKDKALIAISEDNVVSMHDIIHEVGREIVRQESSNPGNRSRLCDPDDIYEVLKNDKGTEAIRSIRAHLSAIRRLKLSPHIFAKMIQLQFLDFHTEYYDQDSLDLLPHGLESFPNELRYLRWMNYPLKSLPEKFSAENLVILDLSYSRLEKLWHGVKDLVNLKEVKLFGSKFLKELPDFSKAINLELLDIRFCDLLSGQACEIRLGSLPSPCQIYK*	718

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops4g01072	717	Gene3D	-	212	369	IPR027417	-
	Rops4g01072	717	Pfam	NB-ARC domain	224	457	IPR002182	GO:0043531
	Rops4g01072	717	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	46	698	IPR044974	GO:0006952
	Rops4g01072	717	FunFam	Disease resistance protein (TIR-NBS-LRR class)	42	210	-	-
	Rops4g01072	717	Gene3D	-	375	459	IPR042197	-
	Rops4g01072	717	SUPERFAMILY	Toll/Interleukin receptor TIR domain	42	185	IPR035897	-
	Rops4g01072	717	SUPERFAMILY	L domain-like	569	698	-	-
	Rops4g01072	717	PRINTS	Disease resistance protein signature	242	257	-	-
	Rops4g01072	717	PRINTS	Disease resistance protein signature	635	651	-	-
	Rops4g01072	717	PRINTS	Disease resistance protein signature	410	424	-	-
	Rops4g01072	717	PRINTS	Disease resistance protein signature	317	331	-	-
	Rops4g01072	717	ProSiteProfiles	TIR domain profile.	44	208	IPR000157	GO:0007165
	Rops4g01072	717	SMART	till_3	45	182	IPR000157	GO:0007165
	Rops4g01072	717	Pfam	TIR domain	46	213	IPR000157	GO:0007165
	Rops4g01072	717	Pfam	Leucine Rich Repeat	639	658	IPR011713	-
	Rops4g01072	717	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	208	469	IPR027417	-
	Rops4g01072	717	Gene3D	-	42	211	IPR035897	-
	Rops4g01072	717	SUPERFAMILY	"Winged helix" DNA-binding domain	446	555	IPR036390	-
	Rops4g01072	717	Gene3D	Ribonuclease Inhibitor	551	714	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops4g01072	Rops-Chr4	29076407	29085880	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops4g01072	39	695	WRKY Transcription Factor Family	AT4G12020	32.789	1.54e-89	305

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops4g01072	-		-	ccaj:109791596	862.448