Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01068 ATGATGCGCTCCCACTCTAGCTTATTCCCTCTTTTTCTAAACTTCTTTTTCAGCTTCGCACTTTCTCTCTCCTCCGACGGCCTCGCCCTTCTCTCTCTAAAAACCGCCGTCGACCAACCCTCTGGCGGCGCATTCTCCGACTGGAACGACGGTGATCCCACACCGTGCAGCTGGTCGGGAATCTCCTGCTCGAACATCTCCGGCGTACCGGAGCCACGAGTGGTCGGAATTTCCCTCGCTGGAAAATCCCTCCGCGGCTATATTCCCTCGGAGCTCGGCACTCTACGCTACCTCCGGCGTCTCAACCTACACGACAACGACTTCTCCGGCGTTGTTCCGGTGCAGATCTTCAACGCCACCGCACTCCACAGCATCTTCCTCCACCGGAACAACCTCTCGGGTCCCTTCCCTCCCTCAATCTGCACCGTCCCTCGCCTCCAAAACCTCGACCTCTCCGATAACTCCTTCTCCGGCCACATCCCCGACAATCTCAAGAACTGCAAGCAGCTCCAAAGGCTTACCCTCGCGAGGAACAAATTCTCCGGCGAGATTCCGACCGGCGTGTGGCCGGAACTTCAGAATCTCATCCAACTCGACCTCTCCGATAACGATTTCCAAGGTTCGATCCCTGAAGACATCGGCGACCTTGAATCCCTCTCCGGCACGTTGAACCTCTCGTTCAACCACCTCTCCGGTAGCGTTCCGAAGTCTCTCGGGAAATTACCGGCAATCGTTAGTTTCGATCTCCGGAATAACAATCTCAGTGGTGAAATTCCCCAAACGGGGTCGTTTTCGAATCAGGGCCCAACCGCTTTTCTCGGTAACCCGAACCTGTGTGGGTTTCCATTAAGAAAACCCTGCACCGGTTCGAACCGGGAAAATGAACCCAGTTCAGTTTCTTCCGAACCGGGTAACCGGTCGAAAGGGCCAAGCCCCGGTTTGATTATTTTAATCTCAGTGGCTGATGCTGCTGGGGTTGCTCTCATTGGGCTTGTGATTGTTTATGTTTATTGGAAGAGAAAGGATGATTCCAATGCTTGTAGTTGCACAGGGAAGAGTAAATTTGGTGGGAATGATAACGATGATGATGATGAGAAAGGGAAAGTGTGTGCATTCCCATGTATATGTGGTTCTAAGAATGAAGATGATGATGAATTTGAAGTGGAGGTAGATGGGGGAGTGAGAGGGGAAGGGGAAGGGGAATTGGTGACACTTGATAAAGGTTTGAATATTGTGCTTGATGAGCTTTTGAGGGCTTCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGCTTGGAAATGGGGTGCCTGTGGCTGTGAGGAGATTAGGGGAAGGTGGAGAAGAGAGGTATAAGGAGTTTGCTGCAGAGGTGCATGCCATTGGGAAGGTGAAGCACCCTAACATTGTGAGGTTGAGAGCTTATTATTGGGCTCATGATGAGAAGCTTCTCATTAGTGATTTCATATCCAATGGCAATTTGGCCAATGCCCTTCGAGGGAGAAATGGCCAACCATCTCCAAACATTTCATGGTCCACCAGGTTGAGAATTGCCATAGGAACAGCAAGGGGCTTGGCCTATCTCCATGAATGCAGTCCAAGAAAATTTGTCCATGGTGACATCAAACCCTCTAATATCCTTCTTGACAATAACTTCCAACCCTACATTTCAGATTTTGGTCTTAACAGGCTAATCAGCATCACTGGAAACAACCCCTCCACTGGTGGCTTCATGGGTGGAGCTCTTCCTTACATGAAGTCATCACAGAAAGAGAGAACCAACAATTACAAAGCCCCTGAGGCTCGTGTCCCTGGCTGCAGACCCACCCAGAAATGGGATGTATATTCATTTGGAGTTGTATTGCTTGAATTGCTAACTGGGAAATCACCAGAATCATCTCCAACCACATCAACTTCAATGGAAATACCTGACTTGGTAAGGTGGGTAAGAAATGGGTTCCAACAAGAAAGCCCTTTATCTGAAATGGTTGATCCATCACTGCTCCAAGAAGTGCGTGTTAAGAAAGAGGTACTGGCTGTGTTTCATGTAGCACTTGCATGCACTGAAGGAGACCCTGAAGTCAGGCCTAGAATGAAAACTGTCTCTGAAAATCTTGAAAGGATTGGAACATAA 2148 0.4939 MMRSHSSLFPLFLNFFFSFALSLSSDGLALLSLKTAVDQPSGGAFSDWNDGDPTPCSWSGISCSNISGVPEPRVVGISLAGKSLRGYIPSELGTLRYLRRLNLHDNDFSGVVPVQIFNATALHSIFLHRNNLSGPFPPSICTVPRLQNLDLSDNSFSGHIPDNLKNCKQLQRLTLARNKFSGEIPTGVWPELQNLIQLDLSDNDFQGSIPEDIGDLESLSGTLNLSFNHLSGSVPKSLGKLPAIVSFDLRNNNLSGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKPCTGSNRENEPSSVSSEPGNRSKGPSPGLIILISVADAAGVALIGLVIVYVYWKRKDDSNACSCTGKSKFGGNDNDDDDEKGKVCAFPCICGSKNEDDDEFEVEVDGGVRGEGEGELVTLDKGLNIVLDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEERYKEFAAEVHAIGKVKHPNIVRLRAYYWAHDEKLLISDFISNGNLANALRGRNGQPSPNISWSTRLRIAIGTARGLAYLHECSPRKFVHGDIKPSNILLDNNFQPYISDFGLNRLISITGNNPSTGGFMGGALPYMKSSQKERTNNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPESSPTTSTSMEIPDLVRWVRNGFQQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEVRPRMKTVSENLERIGT* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01068 715 CDD STKc_IRAK 424 713 - -
Rops4g01068 715 ProSiteProfiles Protein kinase domain profile. 418 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01068 715 MobiDBLite consensus disorder prediction 288 308 - -
Rops4g01068 715 Pfam Leucine rich repeat 144 205 IPR001611 GO:0005515
Rops4g01068 715 Gene3D Phosphorylase Kinase; domain 1 416 493 - -
Rops4g01068 715 Gene3D Transferase(Phosphotransferase) domain 1 494 715 - -
Rops4g01068 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 164 713 IPR046959 -
Rops4g01068 715 SUPERFAMILY L domain-like 24 284 - -
Rops4g01068 715 Pfam Protein kinase domain 423 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01068 715 SUPERFAMILY Protein kinase-like (PK-like) 423 710 IPR011009 -
Rops4g01068 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Rops4g01068 715 Gene3D Ribonuclease Inhibitor 189 289 IPR032675 -
Rops4g01068 715 Gene3D Ribonuclease Inhibitor 23 188 IPR032675 -
Rops4g01068 715 MobiDBLite consensus disorder prediction 290 307 - -
Rops4g01068 715 SMART serkin_6 422 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01068 715 FunFam Leucine-rich repeat receptor-like protein kinase 194 289 - -
Rops4g01068 715 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 190 - -
Rops4g01068 715 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 494 715 - -
Rops4g01068 715 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Rops4g01068 715 FunFam Leucine-rich repeat receptor-like protein kinase 401 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01068 Rops-Chr4 28981786 28985907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01068 20 713 Receptor kinase-like Gene Family AT1G67510 68.451 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops4g01068 Pkinase 1.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01068 - - var:108346287 1118.61