Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01048 ATGGCTTCTCCATTCCCGGTGTTGAATATTTGGATATGTCTAATTCACCAACCTGTGCTCGCCCTTGCATGGCATGGTTGTGTTCTTCAAGCAGTGAAGAACGACCAACACATGATGCAGCAACAACTGTGGGTTGTCCACGATGGAGATAATGGCCCCAAAAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTGTTGCACGTGCAAACTTGTATCACTTGGGGCAGTTCCTAGCTGGTAAGCGTGCTGATGCTCCACAGGAGGCGCTCCAAATTTTTGGCACCGTATCAAGAGAGCTATCATCTAAGAGATATTTGGGTACGGTTGTTGAAGAGGACACCTTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCACATCATCATTATTGGGGAAGTTTGGAGCTTTCCCTAAGGCTGTCATAAGAACTTACACGAAGCAGTTACTGCTTGGACTTGAGAACTTGCACAAAAATGCGATCATGCACAGAGATATTAAGGGAGCCAATATTCTTGTAGATAACAAAGGGTGCATAAAACTTGCGGATTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAGGCCATGAAGGGTACTCCATATTGGATGACTCCTGAAGTTATTCTCCAGACCGGGCATAGTTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACCGGAAAGCCTCCCTGGAGCCAGCAATACCAGCAAGAGTTTGGAGCTTTCCCTAAGGCTGTCATAAGAACTTACACGAAGCAGTTACTGCTTGGACTTGAGAACTTGCACAAAAATGCGATCATGCACAGAGATATTAAGGGAGCCAATATTCTTGTAGATAACAAAGGGTGCATAAAACTTGCGGATTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAGGCCATGAAGGGTACTCCATATTGGATGACTCCTGAAGTTATTCTCCAGACCGGGCATAGTTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACCGGAAAGCCTCCCTGGAGCCAGCAATACCAGCAAGAGCGTGTTGCTATGGGCCTTGCTATCCTTGCGCGTGCTGCTGCTGATGGTCACAGAGTTGAGTCTGCTGACATACTTCATCAGGTCTTGGAATGA 1188 0.4714 MASPFPVLNIWICLIHQPVLALAWHGCVLQAVKNDQHMMQQQLWVVHDGDNGPKREREYKVVIKFVARANLYHLGQFLAGKRADAPQEALQIFGTVSRELSSKRYLGTVVEEDTLNILLEFVPGGSTSSLLGKFGAFPKAVIRTYTKQLLLGLENLHKNAIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKAMKGTPYWMTPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEFGAFPKAVIRTYTKQLLLGLENLHKNAIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKAMKGTPYWMTPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQERVAMGLAILARAAADGHRVESADILHQVLE* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01048 395 Pfam Protein kinase domain 104 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01048 395 Pfam Protein kinase domain 249 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01048 395 Gene3D Transferase(Phosphotransferase) domain 1 66 247 - -
Rops4g01048 395 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 103 246 - -
Rops4g01048 395 ProSiteProfiles Protein kinase domain profile. 14 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01048 395 SUPERFAMILY Protein kinase-like (PK-like) 66 245 IPR011009 -
Rops4g01048 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Rops4g01048 395 SUPERFAMILY Protein kinase-like (PK-like) 248 365 IPR011009 -
Rops4g01048 395 Gene3D Transferase(Phosphotransferase) domain 1 248 393 - -
Rops4g01048 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Rops4g01048 395 SMART serkin_6 59 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01048 Rops-Chr4 28478090 28516622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01048 248 364 MAP Kinase Kinase Kinase AT1G54960 85.470 6.16e-67 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops4g01048 Pkinase 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01048 K20606 - gmx:100779001 283.878