Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01047 ATGTCAGACATGGATGGCTACAAACTCCTTGGACATGTTGGGTTGGAAATGGACCTTCCTGTTGTTATGATGTCTGCTGATGGTACAACAAAAGCTGTCGTGAAGGGAATTAGACAAGGGGCTTGCGATTATTTGATTAAGCCTGTACGTAAGGAGGAACTAAGGAATATATGGCAGCGTTTTGTTGGAGCAGAGACGTTTCCTAGTGAGCCAGGCTTTCAATGA 225 0.4444 MSDMDGYKLLGHVGLEMDLPVVMMSADGTTKAVVKGIRQGACDYLIKPVRKEELRNIWQRFVGAETFPSEPGFQ* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01047 74 Gene3D - 1 71 - -
Rops4g01047 74 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160
Rops4g01047 74 Pfam Response regulator receiver domain 1 57 IPR001789 GO:0000160
Rops4g01047 74 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 62 IPR045279 GO:0009736
Rops4g01047 74 SUPERFAMILY CheY-like 1 63 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01047 Rops-Chr4 28477712 28477936 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01047 1 62 Response Regulator Gene Family AT4G16110 69.355 6.27e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops4g01047 Response_reg 2.7e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01047 - K14491 pcin:129311779 110.153