Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01046 ATGACTTGCCAAGGGGATATCACTGATGTCATTGCTTGCACTAGCTTGATTCGTGGGACCTGCAGGCCTGACGGTGCCAAAGCCACACCTAATCCCTGCGAAGGGGTAGAGAAGGAGACCATAAACTTGGGGCTATGGCAAGCTTGTGCGGGGCCGTTGGTCAACCTTCCTCCGGCTGGGACTCACGTTATTTACTTCCCTCAAGGCCATAAGGATTCTGTTTATGCATTGGCAGTGAATGAAGCCGGAACAATTCTTGTCTCTGTTGGCACAGAAAAGGTTGTACGTGTCTGGGACCCAAGATCAGGATCAAAGACTCTAAAACTTAGAGGGCATGCAGATGACATGCAAGAAAAAAGAGGGCTGGCACAAGGGCAGACTCGGGGAGTGATCTTCACGGCACTTGATGAAGTTGCATGGTTGTATAGTGTACATGGAAGCAACGTGGCATGCTGTCCGGTTGTGCATGCATTTGCTATTATGACATCCCAAAAGATCCCACATCCTGATGCCAAGAAGCCCGAAGACTGGGATGATGAGAAAGATGGTGAGTGGACACCACCTACCTTTGCCAACCCTAAGTACAAGGGCCCATGGAAAGCAAAGAAAGTTAAGAACCCATCTTCCTCACAAGACGAAATCTCCCTTTCCTCGCGTCAGATTCTGCTCCGTTCATCTTTATCTTCCCAGGTTAACAACTCCATGTCAGGATCCTGCATTAATGCATCACCGCTCCAAGATGGGAAGATCTCGGCCCTTGATCCCACCACTGGAGCCACCACTTCAAACCATGCTGTTCTCTCCACTTCAGCTCGGGCTGGTTCCGCTGCCAACGTGTCTTCCGCGTCTGTAGGAATCAGTGAAAACGAGACTGATGATTATGACTGTGAAAGTGAGGAGGATGTTGAAGCATTGGTCAAGGAAGTTCCGACAGAGTCTGTTCCTTCTAGGAGTTCTTCAAAACGAAGCAAAGCAGCAGAAGTTCATATTTGGTCTGAGAAGAGAAGGAGGACTCCAAGTTCAGATGTTGTCAGATGGACTGAGTTTGTATCCCATGAGTGTTTGCTTCTCCCTTATGAACAAGCACTTACTGGGGAGGATTCTACTTCTGGGCTTCATTATGTTTGCTCAGCTCGCATGCTATGGGTTGGGGAACGTACCCGCCAACTTGATGGTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGGCGAGTGATAAGAAATAG 1242 0.4863 MTCQGDITDVIACTSLIRGTCRPDGAKATPNPCEGVEKETINLGLWQACAGPLVNLPPAGTHVIYFPQGHKDSVYALAVNEAGTILVSVGTEKVVRVWDPRSGSKTLKLRGHADDMQEKRGLAQGQTRGVIFTALDEVAWLYSVHGSNVACCPVVHAFAIMTSQKIPHPDAKKPEDWDDEKDGEWTPPTFANPKYKGPWKAKKVKNPSSSQDEISLSSRQILLRSSLSSQVNNSMSGSCINASPLQDGKISALDPTTGATTSNHAVLSTSARAGSAANVSSASVGISENETDDYDCESEEDVEALVKEVPTESVPSRSSSKRSKAAEVHIWSEKRRRTPSSDVVRWTEFVSHECLLLPYEQALTGEDSTSGLHYVCSARMLWVGERTRQLDGAHVEFLRGVANPLGIKASDKK* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01046 413 Pfam Calreticulin family 163 208 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops4g01046 413 SMART WD40_4 60 99 IPR001680 GO:0005515
Rops4g01046 413 SUPERFAMILY P-domain of calnexin/calreticulin 164 208 IPR009033 GO:0005509|GO:0005515
Rops4g01046 413 Gene3D - 42 142 IPR015943 GO:0005515
Rops4g01046 413 Pfam Creatinase/Prolidase N-terminal domain 122 165 - -
Rops4g01046 413 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 349 412 IPR002480 GO:0003849|GO:0009073
Rops4g01046 413 Gene3D Calreticulin/calnexin, P domain 159 216 IPR009033 GO:0005509|GO:0005515
Rops4g01046 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 67 99 - -
Rops4g01046 413 Pfam Class-II DAHP synthetase family 341 411 IPR002480 GO:0003849|GO:0009073
Rops4g01046 413 Gene3D Aldolase class I 256 412 IPR013785 -
Rops4g01046 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 67 108 IPR001680 GO:0005515
Rops4g01046 413 SUPERFAMILY WD40 repeat-like 66 115 IPR036322 GO:0005515
Rops4g01046 413 MobiDBLite consensus disorder prediction 168 185 - -
Rops4g01046 413 SUPERFAMILY Aldolase 340 411 - -
Rops4g01046 413 MobiDBLite consensus disorder prediction 167 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01046 Rops-Chr4 28445188 28446692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01046 23 76 B3 DNA Binding Superfamily AT5G20730 57.407 2.32e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01046 K01626 - nnu:104604561 122.864