Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01042 ATGGTCACCTTCGGGTTTCACCAGTACCAAGTCGTGGGAAGAGCTCTACCCGCTGAAACTGATAGGCATCCTAAGATCTATAGGATGAAGCTGTGGGCCACTGACGAGGTCCGTGCCAAATCCAAGTTCTGGTGTTTCTTAAGAAAGTTGAAGAAAGTCAAGAAAAGCTCGGTGGAAACTCTAATGGGAGCTGCAACCCATGATTATCTTGCACCCTTTTGCACCCCTTCCTTCTTGCACTACCACTCATGCACCACAAGGCTCTCCGAGGAGCTCTTCCAGGTGACCAGAACGTGA 297 0.4983 MVTFGFHQYQVVGRALPAETDRHPKIYRMKLWATDEVRAKSKFWCFLRKLKKVKKSSVETLMGAATHDYLAPFCTPSFLHYHSCTTRLSEELFQVTRT* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01042 98 Gene3D - 1 68 - -
Rops4g01042 98 PANTHER 60S RIBOSOMAL PROTEIN L18A 4 61 IPR028877 -
Rops4g01042 98 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 62 IPR023573 GO:0003735|GO:0005840|GO:0006412
Rops4g01042 98 FunFam 60S ribosomal protein L18a 1 68 - -
Rops4g01042 98 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 60 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01042 Rops-Chr4 28365732 28366028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01042 1 61 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 78.689 1.81e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01042 K02882 K22683 mnt:21404537 101.679