Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01038 ATGGAAGAAAGCCATGGCTACCAATGTTCCAAGACAAACCCTTCTAATAACCTTGATGAAGATGAGGGTGAAAGCAAGGCCAATGAAGATGAAAATAACCAAAACAACAATGGAGGAAGCTCAAGCAACAGCACAGTGGAAGAGAACGAAAAAAAGGTAAGGCCTTATGTTAGATCCAAGTTACCAAGGCTTCGATGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGGGGACAAGAGAGAGCAACACCAAAGTTGGTTCTTCAATTGATGAATATAAAAAGTTTAACTATTTCCCATGTCAAGAGTCATTTACAGATGTTTAGAAGCAAAAGGGTAGATGACCCAAATCAAGTATCGACCGATCATAGGAATCTTGTAGAAACTGGGGACAAAAATATTTATAACCTAAGCCAACTTCCCATACTTCAAGGATATGATTCGAGCCAAAGTTCATCCTACAGATATGGATTTGGGGGTGCTTCTTTCGGTGTCTATGAAAAAATGTTCCACAGACCTTTTGATCGGAGTAATGGCATTTACCGGGTGGGTTCTTCAATTTTTGGTGAACAATCAACAAGTAAAATCCATGAACCAAAAGATGAGTTTCTCTCATTTGGTGCCCATGAAGCTTTATGCACACCCACAAGATTGAGCCACGTTGATCTCAATCCATCAACAAGAGCACAGGACCTTATGCCTATCAACTCAACAGCAAATTCACCAGAATCGAAAACATTGAAAAGGAAGGCTTCAGATAATGCACTTGATTTGGATCTGTCACTAAAATTAAACTCAAAGATCGATGATTCTGAAGGAATCTTGGAAGACCATGAAGTTGATGGTAATTTATCTCTCTCATTGTATTCTCAATCCTCCTCCTCTATTCATAGCAGCAGGTTAAAGGAAGCACGGGATCATTGCAAGGAGCAAAGGAAAATGGCCAGTGCTCTGGATCTGACTATATGA 984 0.4004 MEESHGYQCSKTNPSNNLDEDEGESKANEDENNQNNNGGSSSNSTVEENEKKVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKSLTISHVKSHLQMFRSKRVDDPNQVSTDHRNLVETGDKNIYNLSQLPILQGYDSSQSSSYRYGFGGASFGVYEKMFHRPFDRSNGIYRVGSSIFGEQSTSKIHEPKDEFLSFGAHEALCTPTRLSHVDLNPSTRAQDLMPINSTANSPESKTLKRKASDNALDLDLSLKLNSKIDDSEGILEDHEVDGNLSLSLYSQSSSSIHSSRLKEARDHCKEQRKMASALDLTI* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01038 327 NCBIfam myb-like DNA-binding domain, SHAQKYF class 62 116 IPR006447 GO:0003677
Rops4g01038 327 MobiDBLite consensus disorder prediction 1 54 - -
Rops4g01038 327 FunFam Myb family transcription factor 60 118 - -
Rops4g01038 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 118 IPR017930 -
Rops4g01038 327 MobiDBLite consensus disorder prediction 230 250 - -
Rops4g01038 327 MobiDBLite consensus disorder prediction 230 255 - -
Rops4g01038 327 Gene3D - 61 118 - -
Rops4g01038 327 Pfam Myb-like DNA-binding domain 64 112 IPR001005 -
Rops4g01038 327 MobiDBLite consensus disorder prediction 30 46 - -
Rops4g01038 327 SUPERFAMILY Homeodomain-like 61 116 IPR009057 -
Rops4g01038 327 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 28 292 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01038 Rops-Chr4 28289174 28296784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01038 28 119 G2-like Transcription Factor Family AT2G42660 59.783 1.50e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops4g01038 Myb_DNA-binding 4.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01038 - - gmx:100801120 407.142