Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01031 ATGGATTGCAACCTTGCTAGTAACCCTACCTCTTCTGCAGTGTCATCTTCTAAGGCAAAGAAGAGCAAGGAGAAAAAGTATGGGAAGAAAAGCAAAGGGGAAATGAAGCTTTCAACTGACCCACAAAGTGTGGCAGCAAGAGAACGAAGGCATAGAATCAGTGACAGGTTCAAGATCTTGCAAAGCATGGTCCCTGGTGGGAGTAAGATGGACACAGTGTCTATGTTGGAAGTAGCCATTCAATATGTGAAATTCCTCAAGACCCAGATTTGGCTTCACCAAACCATGATAAACTTTGTGGATGATGAATCATCACCCTCACCCATGTACCTTGCTGATCACTATTTCTCTTCTGAACAGATCATTTCCCTTCAGCAAAACCCATCACTTGATTATGATATGCAGACTTTACCAAATTTCCCACTGGCTCAATGTTGCTTCCAAGGTGAAGAAAATGCCACCTTTGATGCCACTTTGAAATATTGGCCAGCTTAG 495 0.4283 MDCNLASNPTSSAVSSSKAKKSKEKKYGKKSKGEMKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEVAIQYVKFLKTQIWLHQTMINFVDDESSPSPMYLADHYFSSEQIISLQQNPSLDYDMQTLPNFPLAQCCFQGEENATFDATLKYWPA* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01031 164 Gene3D - 34 95 IPR036638 GO:0046983
Rops4g01031 164 MobiDBLite consensus disorder prediction 1 17 - -
Rops4g01031 164 Pfam Helix-loop-helix DNA-binding domain 47 86 IPR011598 GO:0046983
Rops4g01031 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 37 86 IPR011598 GO:0046983
Rops4g01031 164 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 14 137 IPR045843 GO:0003700|GO:0006355
Rops4g01031 164 MobiDBLite consensus disorder prediction 1 48 - -
Rops4g01031 164 SMART finulus 43 92 IPR011598 GO:0046983
Rops4g01031 164 CDD bHLH_AtIND_like 38 97 - -
Rops4g01031 164 FunFam Transcription factor LAX PANICLE 40 103 - -
Rops4g01031 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 98 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01031 Rops-Chr4 28107291 28107840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01031 29 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 56.452 2.90e-20 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g01031 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01031 - - pvu:PHAVU_010G073400g 182.57