Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01017 ATGGACTACTTGAAATTTATCCCACTACTTTCCTTTCTATATGCATGCATTCATATCCTGTTCTTTGGCCTTAACAGGAAAAACACAAAATCTCCCAAGCTCCCACCAAGTCCTCCTTGTTATCCCATCATAGGAAACATATTGCAACTTTGCCCAACAAAACTGCACCAATCACTTAGTAAACTCTCCAAAACATATGGACCTATCATGACTGTCAAGATAGGTACTATTACCACTGTGGTCATTTCATCTCCAAGTTTGGCCAAAGAAGCACTTCATAAAAATGACCAAGCCTTATCTAGCCGATTAATACCAGATGCTGTTGGAGCACTTGCACATGATAAAACTTCTATAATATCCTTGCCTGTATCACCAAAGTGGAAGACCTTGAGAAAAGTTTGTGCAACCAAAATATTCTCTTCTCAACAGCTTGATTTTACTCAAGCTCTGCGCCTAGAAAAGCTGAAAGAACTAGTTGTTTACTTGGGAGAAAATTGCAGAGAGGGTGAAGCTGTTGATATTGACTTTTATCCTATTTTACGTAGATTTGACCCGCAGGGAGCAAGGAGGAAGATGGAAAACTATTACCAAACATTACTTGCAGTTTTTGAGTCTATTGTTGAAGATAGAATTCAAAAGAAAGATTCCATCGAAGGAAGTGATGTGTTAGACTCATTTCTCAATATCACCCAAAAGGAGAATTCTGAATTAACACGCCATGATGTATTACATCTGTTTCTGGACTTATTTGTAGCTGGGACAGACACAACATCAGTCACAGTAGAATGGGCTATGGCAGAGTTGCTACACAACCCAGAAAATTTGATGAAAACAAGGAAAGAACTTCAACAAGTCCTAAGGAATGATGGAGAGCTTAAAGATTCAGATATCACTAAGCTCCCTTACCTACAAGCCGTTATAAAAGAAACCCTTAGACTGCATCCAGCAGCCCCCATACTAACCCACAAATCAGAAGCTGAGGTAGACATAGGTGGCTACAGGGTACCCAAAGATGCACAAGTTTTTGTTAATATATGGAGCATGGGAAGAGACTCAAGCATTTGGACAGAGCCAAATTTGTTTCTACCTGAAAGGTTTTTGGAAAGTGAAGAGGCTTTTAGAGGAGGAGATTTTGGATTCATCCCCTTTGGAGCTGGAAGAAGAATGTGTCCTGGTGCTTCACTAGCTCAAAGGGTTGTGCATACCATGCTGGCCTCACTTCTGTACCATTTTGATTGGAAGTTAGTGGATGGGCAAAATTCGCAAGCCATGGACATGACTGAAAAGTTTGAAACTACATTACACAAAGTCAAGCCTCTCATGGCCATTCCTATCAAAGAATAA 1344 0.401 MDYLKFIPLLSFLYACIHILFFGLNRKNTKSPKLPPSPPCYPIIGNILQLCPTKLHQSLSKLSKTYGPIMTVKIGTITTVVISSPSLAKEALHKNDQALSSRLIPDAVGALAHDKTSIISLPVSPKWKTLRKVCATKIFSSQQLDFTQALRLEKLKELVVYLGENCREGEAVDIDFYPILRRFDPQGARRKMENYYQTLLAVFESIVEDRIQKKDSIEGSDVLDSFLNITQKENSELTRHDVLHLFLDLFVAGTDTTSVTVEWAMAELLHNPENLMKTRKELQQVLRNDGELKDSDITKLPYLQAVIKETLRLHPAAPILTHKSEAEVDIGGYRVPKDAQVFVNIWSMGRDSSIWTEPNLFLPERFLESEEAFRGGDFGFIPFGAGRRMCPGASLAQRVVHTMLASLLYHFDWKLVDGQNSQAMDMTEKFETTLHKVKPLMAIPIKE* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01017 447 PRINTS P450 superfamily signature 381 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 PRINTS P450 superfamily signature 305 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 PRINTS P450 superfamily signature 252 269 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 PRINTS P450 superfamily signature 390 401 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 PRINTS E-class P450 group I signature 380 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 PRINTS E-class P450 group I signature 390 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 PRINTS E-class P450 group I signature 344 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 PRINTS E-class P450 group I signature 304 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Rops4g01017 447 CDD CYP76-like 63 444 - -
Rops4g01017 447 SUPERFAMILY Cytochrome P450 35 444 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 FunFam Geraniol 8-hydroxylase 196 443 - -
Rops4g01017 447 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 175 446 - -
Rops4g01017 447 Pfam Cytochrome P450 175 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 Pfam Cytochrome P450 35 177 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01017 447 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 383 392 IPR017972 GO:0005506|GO:0016705
Rops4g01017 447 Gene3D Cytochrome P450 21 442 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01017 Rops-Chr4 27542175 27544421 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01017 9 447 Cytochrome P450 AT2G45550 40.241 5.49e-130 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01017 - - pvu:PHAVU_010G012700g 620.928