Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01014 ATGAAGGGTGATGTTGAGTGGTCTGGTGCATCGCAGAGCATGTTCCTGTATGTAGACTGGTGCAGATTAAATCTTCTTGATGATATTGCCATCTTGAATGAAGATGTTGACAACAATATGTACCTTTCGAATTGGCTTACAGGTTCTGTAACTAGAGGAAAGGTCGATCTTACTTTAGACAAAGCTAGTATAGAGGCAACTGTCAAGGAAGGTATTGTAGTTGATGGTGGGTGCACTCCACTGAGACTTGCATCAAAGGTCGATGAAATCAATGATAACCTTGATAATGATGAGAAAAAAGCTAGTTGTTTATTTGATATGTTAAGAACCCAAGTTTCTCAAGGTAAGCAATCCTTCCATACAATTCATGCTATATCCCTTCTTGGAGCTTTGGCCAAGCTTGAAGCTACTATGGTAACTTATCCTCTTCTAGTTGTGAAGTGGAAGATATGCAGATTTTGCAAGGCAAGTAACATCATGCAACTTTGGTGTCTATGCAATGGACTGGATAGGAATGCTATTTACAGTATCATGGTGGAAGTTTCAAAGCCAAATATTGCAGACTTTTATCCTATTTTACGTAGATTTGACCCGCAGGGAGCAAGGAGGAAGATGGAAAACTATTACCAAACATTACTTGCAGTTTTTGAGTCTATTGTTGAAGATAGAATTCAAAAGAAAGATTCCATCGAAGGAAGTGATGTGTTAGACTCATTTCTCAATATCACCCAAACGGAGAATTCTGAATTAACACGCCATGATGTATTACATCTGTTTCTGGACTTATTTGTAGCTGGGACAGACACAACATCAGTCACAGTAGAATGGGCTATGGCAGAGTTGCTACAAAACCCAGAAAAATTGATGAAAACAAGGAAGGAACTTCAACAAGTCCTAAGCAATGATGGAGAGCTTAAAGATTCAGATATCACTAAGCTCCCTTACCTACAAGCTGTTGTAAAAGAAACCCTCAGATTGCACCCAGCAGCCCCCATACTAACCCACAAATCAGAAGCTGAGGTAGACATAGGTGGCTTCAGGGTACCCAAAGATGTACAAGTTTTTGTTAATATATGGAGCATGGGAAGAGACTCAAGCATTTGGACAGAGCCAAATTCGTTTCTACCTGAAAGGTTTTTGGAAAGTGAAGAGGCTTTTAGAGGAGGAGATTTTGGATTCATTCCCTTTGGAGCTGGTAGAAGAATGTGCCCTGGTGCTTCACTAGCTCAAAGAGTTGTGCATACCATGCTGGCCTCACTTCTGTACCATTTTGATTGGAAGTTAGTGGATGGGCAAAAATCGCAAGCCATGGACATGAGTGAAAAGTTTGAAACTACATTACACAAAGTCAAGCCTCTCATGGCCATTCCTATCAAAGAATAA 1383 0.402 MKGDVEWSGASQSMFLYVDWCRLNLLDDIAILNEDVDNNMYLSNWLTGSVTRGKVDLTLDKASIEATVKEGIVVDGGCTPLRLASKVDEINDNLDNDEKKASCLFDMLRTQVSQGKQSFHTIHAISLLGALAKLEATMVTYPLLVVKWKICRFCKASNIMQLWCLCNGLDRNAIYSIMVEVSKPNIADFYPILRRFDPQGARRKMENYYQTLLAVFESIVEDRIQKKDSIEGSDVLDSFLNITQTENSELTRHDVLHLFLDLFVAGTDTTSVTVEWAMAELLQNPEKLMKTRKELQQVLSNDGELKDSDITKLPYLQAVVKETLRLHPAAPILTHKSEAEVDIGGFRVPKDVQVFVNIWSMGRDSSIWTEPNSFLPERFLESEEAFRGGDFGFIPFGAGRRMCPGASLAQRVVHTMLASLLYHFDWKLVDGQKSQAMDMSEKFETTLHKVKPLMAIPIKE* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01014 460 PRINTS E-class P450 group I signature 317 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 PRINTS E-class P450 group I signature 403 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 PRINTS E-class P450 group I signature 254 271 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 PRINTS E-class P450 group I signature 393 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 PRINTS E-class P450 group I signature 274 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 PRINTS E-class P450 group I signature 357 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 Pfam Cytochrome P450 175 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 Gene3D Cytochrome P450 167 455 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 SUPERFAMILY Cytochrome P450 172 457 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 396 405 IPR017972 GO:0005506|GO:0016705
Rops4g01014 460 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 172 459 - -
Rops4g01014 460 PRINTS P450 superfamily signature 318 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 PRINTS P450 superfamily signature 403 414 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 PRINTS P450 superfamily signature 265 282 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 PRINTS P450 superfamily signature 394 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01014 460 FunFam Geraniol 8-hydroxylase 209 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01014 Rops-Chr4 27408181 27413493 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01014 181 460 Cytochrome P450 AT1G33720 48.780 3.99e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01014 - - tpra:123908921 432.95