Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00993 ATGGAAATGGCGTCCACTCCCCGCACCGTTGAAGAGATCTTCAAGGATTACAGTGCAAGAAGAGATGCCATCGTTCGTGCTTTATCTCAAGATGTTGATGAATTCTATGGACTCTGTGATCCAGAAAAGGAGAACTTGTGCCTCTATGGACATCCAAATGATATGTGGGAAGTGACTCTGCCAGCAGAGGAGGTTCCACCGGAGCTTCCGGAGCCTGCTCTCGGAATCAATTTTGCTAGGGATGGCATGAATCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGTTGCTTTCTGTGGCCTTCTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCTACTGTTTTTGAAGTTGTAACTGAGAGGAAGCCAATAAAAGACAAGCCCACCATAGACAGTGGAAGCAAATCTCGAGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAATCCGAAGTTCGCAGATGAAGGTTACGAGGAGGATGAAGATGAGCATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAATTACAATGCGGATGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGAAAATGTGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAACAATACAAGTGCCCTTCATGCAGCATGAAGCGGGGAAGGCCCTAA 720 0.4597 MEMASTPRTVEEIFKDYSARRDAIVRALSQDVDEFYGLCDPEKENLCLYGHPNDMWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTIDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMKRGRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00993 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Rops4g00993 239 CDD PHD_AL_plant 185 235 IPR044104 -
Rops4g00993 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Rops4g00993 239 MobiDBLite consensus disorder prediction 140 176 - -
Rops4g00993 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Rops4g00993 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Rops4g00993 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0006355|GO:0042393
Rops4g00993 239 SMART PHD_3 185 233 IPR001965 -
Rops4g00993 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Rops4g00993 239 MobiDBLite consensus disorder prediction 148 165 - -
Rops4g00993 239 FunFam PHD finger alfin-like protein 178 234 - -
Rops4g00993 239 Pfam PHD-finger 186 234 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00993 Rops-Chr4 26914542 26917743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00993 4 238 Alfin-like Transcription Factor Family AT5G05610 78.390 9.82e-123 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Rops4g00993 Alfin 5.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00993 K26274 - gmx:100793126 461.84